RNA id: AMCG00008340


Basic Information

Item Value
RNA id AMCG00008340
length 2518
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00008340
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53276379 ~ 53281571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGTTTGACCTCTCCAGCCGAGCCCTCAGGAGAAGCTACGCAGGCGAGCTTGGATGATGAGTTTGCGGCTTTTTATGCTTCCGTTGGGGGGCCTTCGTGTGGAGAGCCCTCTGCCAGTGACAACACAGCTTTCTCCCAGGGCTCCAGCCCCAGTCCTGCTCAGGCcagcgaggaagaggaggatgaggaggggCAGGAGGAAATAGATGATGAGATGAGTGGCATGAAGGTGTGTGCCCCTTACCGCACATCTTGGGGAACGCTGGAGTACCATAATGCCATGGTAGTGGGAGCGGAGGCCTCGGACTGTGTGCGTGTTTTATACGTCCACCCGACGCACAAATCCATGAAGCCCTGCCCCTACTTCCTGGAGGATAAGTGCCGCTTCGTGGACAGGTGCAGGTTCTCCCACGGAGAGGTGGTGTCCGTGTCTGAACTGAGGCAGTTTGAGGATTCAGACCTCAGTTCTTTCCAGGAGGGATCTGCCTGTTTAGCCAGACATGAGGATGGCATCTGGTACCCAGCCACAATCACCGATATCGACAGCGGTTACTACACGGTCAAATTCAACTCGGCTTTGCTGAAGGAAGCAGTGGTGGAAGCTGATGGCATTATCCCCCCACTGAGGAAAGAGCACCCCTCCTCGTCCGAGTCTGAAGATGATGACATGGTGGAGTATTCAGCCTACGCCAAAGTTGTAGATTCAATGTCGACAGAGTCGGAGGACTGGGCTGCTCCCTGTAGCTCAAGTTTTGGGGGCTGGGAGCAACACACCAGAGGAATTGGATCCAAGCTCATGGCCAAAATGGGTTACGAATTTGGGAAGGGCTTGGGAAGGAATGCTGAGGGACGTGTGGAGCCAGTGCTGGCGGTGGTTTTGCCCAAAGGGAAATCTCTGGACCAGTGTGCTGACATCCTGCAGAAGAAAAGGCTGGGGAAGCTCGGCAAGGACAGGCCGGGGAATTCCAGGAAGAAAGGGAAATGGAGGTCAGGCCCTTCCAAAACCCGGACCGATGTTTTTGACTTTTTGAATAGCCAGCTGGGTGGTGAACGCCAGGGCGATTCGGCTGAAGCAGGTGCCCCAGCCGAGACGAACAGTAAAGAGACCTACAGGGGAGGAAAGACGGCTAAGAGGTCTCTCAATGTCAAGCTCTACCAAGCCTCTGGGAAAGTTGCTCAGACCGAGAGGGAAATCAACAGCATTACCAAGTCCCTGAGCAGAAACATGGGAAGGGACAAAGCTATGACAAGTCACCTGGAAGAGAGGCTGTCGGCAGCAAGAAAGCAGCTGGTCGTGCTGAAGGAGCAGGAGGTTAGCATACAGAGGGAGCGCAGGAAAGCCGATACACATAAGAAGATGACTGAGTTTTGATTTTATCAGTTCATTAcccctttattttcttttttacatttgcttttgtgttCATTCTTGTAACTGCAGGACTCGGCGATCCCACACCTGcccatgattttgtttttctccgtCTTCCTCGTAACCGGAGTGATGTGTTTGCATAATTGCAGTCagctgaatgtgtgtgtgtgtatctgtatatatttttgttttaaaaaggaaaaaaaatctaaaagtgtTTGTGGTATAGGAgcatgatttttttctttctttcttttcttcttttgggTTCCATCAGTAAATTGGCTCACAAAATTAGCTTTTCTTTCGTTCCAGGGATTTTCTCATTGTGGGCTCTCCAGCTTAACAGCGCTGAATTTTAAAGCAAGTTCTTTATATAGTGCTCTTTCTTTCCATGTTACCAGAGACACTATAGAAGAGCTTGAAATTCTGGATGAAACCCCTTCAGGGAAgatctctaaatgtatttttttcttttgagtgctttttattttcttctgccgCCGCTGTAATTGTGCCCCgagaaatgcagagagacaGGTTACATTGAGCTGACTCGCAATGGGAAATTTGCCTGTTTTTAGGCTCAGACAGAATTCTGTGACCGGATTTAACCCCTGAAGCCCCccgttttttatttcttattttactattttgaaagtgaaacgccaacttttaaaaatgtacttcaatGTTTGTTCAATTGAACTGAAAACAGGCAGATGCAGGCTTTGTCCTCATCAGCTCTGTGAAATGTCACACTAACACTGTCAGTCGtgggtgctgtgctgtacttGGGGAAGCTCCATGCTGCGTGAGTGCCAGACAACAAGGGAAATGCGACTGGGATACCAAAAGGAATTGCTTTGTGACGTGAATAGAGTTCTGCCCCACTACGGTTATTGTCACGGCATTCTGTTATGGCTTCTTTAATAGTCTGATGAGCAGTACCTTGCgtgatgatgttcatgatgtcattaaacaagaaaaaggtCACACTGTCTCATCTGTTTCATTTCACAACAAAAGAAGAAGCCCTTTTAAATTCTTCCAGAAAAACTGATGACaatatcttgtttttttgtccagAGTACACCTGCCTCGAACATCTGTCTATGTAAACGTTTCCAAGTGATGACAA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38028 lncRNA downstream 128206 53145185 ~ 53148173 (-) True G30417
TU38019 lncRNA downstream 193477 53079584 ~ 53082902 (-) True G30409
TU37882 lncRNA downstream 891812 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 894413 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 938013 52337483 ~ 52338366 (-) False AMCG00008318
TU38106 lncRNA upstream 130423 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 149381 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 205270 53486841 ~ 53491107 (-) True G30505
TU38143 lncRNA upstream 218168 53499739 ~ 53506725 (-) True G30501
AMCG00008332 mRNA downstream 626817 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008331 mRNA downstream 692354 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008329 mRNA downstream 771057 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008324 mRNA downstream 850708 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008323 mRNA downstream 888009 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008339 mRNA upstream 18905 53300476 ~ 53303340 (-) True AMCG00008339
AMCG00008341 mRNA upstream 24227 53305798 ~ 53357218 (-) True AMCG00008341
TU37623 other downstream 2748343 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 3002196 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 3222277 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 3375428 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4993166 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile