RNA id: AMCG00008341



Basic Information


Item Value
RNA id AMCG00008341
length 3414
RNA type mRNA
GC content 0.47
exon number 31
gene id AMCG00008341
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53305798 ~ 53357218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTAAAATCACCCTGAAAGGATTAACCGTGGACTTTCCCTTCACTCCATATAAATGTCAGGAAGATTATATGAACAAGGTCATTGAATGTCTGCAAAATaGAGTAAATGGGGTTCTGGAGAGTCCAACTGGCACAGGGAAGActctgtgtctgctgtgtgcCTCACTGGCCTGGAGAGATCACTTTAAAGACACTATTTCAGCCAGGAAGATAGCAGAAAAGATGGGTGGTGCAGAACTGTTTCCTGATAGGCCCCTACcgaaagtgtgtgtgttaggaTCCAGAGAGCAGCTGTGCATCAACCCTGAAGTCATGAGACAAGAGAGTAACCACATTAAGGTACACATGTGCAGAGCAAAGATGACCTCACGCTCGTGTTTATATTACAACAATGTTGAAGAAAAGAGCACAGAAAAGGAGCTTGTGAACACTATTTTGGATGTGGAAGATTTAGTGAAAGGTGGCACCAAGCACAGggTTTGCCCATATTATTTGTCTCGGACACTAAAGCAGCAAGCGGACATCATATTTATGCCCTATAACTATCTTCTTGATCCAAAGAGTCGGAGAGCTCACAATATTGAACTGAAGGGTGCCGTGGTCATTTTTGATGAAGCACACAATGTGgagaAGATGTGCGAAGAGTCTACCTCCTTTGACCTGAGCCCTTATGATTTGGCCACAGGAATTGAAGCTGTGAATAAGGTCCTAGTGGAGCAAGCCGGCCAGGCCAGCTCCAGTAATGTCAGTGAGGACTTCAGCATGGACATCCTCAATTCAGGTTTAAAAATGGATATTGCCATTGTTGCGAAAATCAAAAGAATTCTCCTTGATCTTGAAGCTGCTATTGACTCTTTTGAACTTCCTATGAATGGACAGGGCATAACCAAACCAGGAAGCTATATCTACGAGCTATTCAAGCAAGTGCAACTTACATTCGACACAAAATCATCCATTTTGGAAGCACTGGAACAGATAACTGGATATTTAGCTGGGCGAGCTGGCAtttttacaaacacaacagGACTACAGAAGCTTGCAGACATTATCCAGttttgtttttattctgtttcaCTGTTTAAGTGTCTGTTCTCCACAGGAACTACACATGTTGTGCATATCCATCGAGATACCAGctttcagaaaaagaaacagaccaCTGATATTTGGTCATCATCTTCCTCTAAAAAACAagGGAATGTCCTGAGTTACTGGTGCTTCTCCCCAGGATTCAGTATGCAGGAACTGGTGCGGCAGGGGGTCCGCTCCATCATCCTCACCAGCGGcaccctctcccctctctcttccttcaCCTCCGAGATGCAAATACCCTTTCCAGTTTCCCTGGAAAACCCTCATGTGATTGAGAAACATCAAATTTTTGTTGGCATTGTCCCAAAGGGGCCGGACAGTGTTCAGCTGAGTTCAGCCTTTGACAGAAGgtttttacCCGATTACATGGCATCTTTGGGAAATACTGTTGTAAACCTTGGGCGCATAGTTCCTCATGGCCtattggttttctttccatCATATCCTGTCATGGATAAGACCATTGAATACTGGAgggAGAAGGGACACAGTAATCGGATAGAAGATATCAAACCAATGTTTGTAGAACCCAAGGGCAAAGGAACGTTCAATGAGGTGATTGATGGCTATTATAACAAAGTGATTGATCCGAAACTGAATGGAGCCAGCTTCTTTGCTGTATGCCGAGGAAAGGCCAGCGAAGGACTGGATTTTGCAGACGCTAACGGCAGAGGAGTCATCATCACAGGCCTTCCTTTCCCCCCTAGAATGGATCCCCGGGTCATcttaaaaatgcagtttcttgAAGAAATGCGAAGGAAGGCATCTGGTGGTGTAAAGtATCTGTCAGGACAGGAGTGGTACAGGCAGCAGGCATCCCGTGCCGTCAATCAAGCCATCGGCAGAGTCATCAGGCATCGGGAAGACTTTGGTGCTATATTTCTGTGTGACCACAGGTTCATGGGCACAGACGCTCGCTCCCAGTTACCCTCTTGGGTTCGCCCCTATGTTCGAGTGTATGACAACTTTGGACACATGATCCGAGACGTGGCGCAGTTTTTCAGGGTTGCCCAGAAAATTATGCCGCCTCCAAAAACAAAGGCGTCTACTTCTAAACGTGAGGCCGTATGTTCATCTGAAGGAGCTTCCATTGGCTGTGCTTCCTCGGCTTCATTTCTGTCAAGCCACGAACATTTTGTGCAGAAGGCCAAGGCACTAGATGCCCATGTCCCCAGTCTTAAAAAGAGACGGCTCAATGACCAATCGCCAGGGGATGGCATTGCTAGGATTTGCATCGAATACGAGACACAAATGCAGTCAAGCCGGAGAAGGACAGCTGGTCTGTTAGATGCTCTGGAGCacaatgagagaaagagaggggatgAAGAGGAAGCACTTGTGGGAGAAGAAAAGGCTAGTCGCTTATCAACGTTGTCTCTTCAACATGACAAACGTATGGAGGACGAGCAAAGGGGAGGAAAGCGGAAAATTAAATTGGTCCAAGATCGGAAACAAAGTGGCTCTCCAAATGTGTCCGAACAAACCAAAGCAGATAAGGCCAAGGTGTTCATGGTGGCAGTGCGGCAGGCCCTGAGCCAGGTGAATTACGAACGCTTCACCCAAGCCATGCAGCAGTACAAGAGGACGGATGACCTGGAGGCTGCAGTGGCCGAGCTGGCTGGACTCTTTATCGGGGATTCTAACAAGCATAGTCTACTGAGAGATTTTTATCAGTTTGTCCGTCCTCACCATAAGAAAAGGTTTGATGAGGTTTGCCTGGAACTGACAGGCGATGGTTGTGGGTACAAACCTGAGCACTCTCTGTCTAAGGAGGAAAGGGAAAAATTAATTCTGCAAACAGAAGCTGCggcagagaaaaaacagaaagatgAGATACCAGCCCTGTCCACCCAAACTGCATTCTCAAAGGAGCAGCTGAACACAAGTCTGCAGATGAACAAGGGGGGCTCTCATCTCAGCACTGACAGTCTTACCAAGGATTCCGCTTTGCCCCTTCAGACTGGTCCTAAAGGCAAACCCCAGAATCTGCCCACACAGAAAAGTCAGCTTCTTTCCTCCTATCTCAGcgatgtgaaaaaaaacatcgGCCTCACCAAGTACAACCAGTTTTATGTGGCAATGCAGGACTACAAAAGAACGGACGGTTATGACAACATGGTTACTACAGTGGTGAGCCTCTTCACCGAAAAAACCGAGGACCTCCGCCTTCTCCGGAtgttctCCATGTTTGTCCGTCCGCACCACAAGCCACAGTTCTCTCAGATGTTTAAAGAGTTGATGGGAGATGCTGACAAGTCCTCAGCAGATGAGGATCTGAAGGTCGAGCAGCAACCTCAGGCTGCAATAAGCCATAATCCT

Function


GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11136 RTEL1; regulator of telomere elongation helicase 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38028 lncRNA downstream 157625 53145185 ~ 53148173 (-) True G30417
TU38019 lncRNA downstream 222896 53079584 ~ 53082902 (-) True G30409
TU37882 lncRNA downstream 921231 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 923832 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 967432 52337483 ~ 52338366 (-) False AMCG00008318
TU38106 lncRNA upstream 54776 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 73734 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 129623 53486841 ~ 53491107 (-) True G30505
TU38143 lncRNA upstream 142521 53499739 ~ 53506725 (-) True G30501
AMCG00008339 mRNA downstream 2458 53300476 ~ 53303340 (-) True AMCG00008339
AMCG00008340 mRNA downstream 24227 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008332 mRNA downstream 656236 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008331 mRNA downstream 721773 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008329 mRNA downstream 800476 52493341 ~ 52505322 (-) True AMCG00008329
TU37623 other downstream 2777762 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 3031615 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 3251696 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 3404847 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 5022585 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile