RNA id: TU25332


Basic Information

Item Value
RNA id TU25332
length 3527
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G20353
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 167934 ~ 182823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGATCTCTTTACAtgggaaaagcaaaaaaaaacggtcaattttcttcttctttttggaCAATCACTCCTAGcacagctgcacacacacacaatagcaaataataacacaaacacacaaatacacgcAACACGAAAATATGCTTTCGGGTTTTTGTGTAGTAATACACATACAAAGTAGTACGGTGTTGTGTGgtcaaaacatattaaatatagtGTATAGTATATTTACCATGGTAGcatcacagtaaagtgtagtgtacCATGGTCAAAACACAGTGAAGAAGTGTGGCGCAACATgctcaaaacacagaaaagtgtGGTGTGTTGCACTGTGCTAAACAACACAAGGAATTATGTGTTGTGTTGGGTAGTGTACTGTGACACAGTAGCATGTCGTGTGGTGTGCTATGGTAGCTTATTGACAAAGTAGCGTGTCGTGCGGTGTGCTATGGTAGTTTATTGACACAGTAGCGTGTTATGTGGTGAACTCTCTACCTCTGCTTCAGATGTAATAGTCCCCAGAATCTGACATCAAACTGCAACGACACAAAGTGAATgatcacaaatgtgtttatttgaaatcatgGTGTGGCAGTGAGATGAAAGACACCTCTGGGATATACAGAAAGGAAGACACGAGAGAGACGTAGAGACAGAGACATGAGAGAGACGTGGAGACAGAGACCCGAGAGAGACAtggagacagaggcagagacacGAGAGAGACGTGGAGACAGAGACCCGAGAGAGAcgtggagacagagacagagacacgaGAGAGAtgtggagacagagacagagacacgaGAGAGATGTGGAGACAGAGACACGAGAGAGACgtagagacagagacacaagagAGATGTAGAGACAGAGACACGAGAGAGACgtagagacagagacacaagagAGACGTGTAGACAGAGACACAAGAGAGAtgtagagacagagacacaagagAGATGTAGAGACGTGGAGACAGACAAAAGAGAGACGTGGAGCTTTCTATCGAGCTGATCCAGCAATGGGGAATGAATGCAGCGGGTGTAAATCCTTCCCCCCGCCGTGTTGTGAAAACATGGGCACACAGGGGACAGTGTGTTCAGCGCTCAGTGTGTTGTGATGAAGTTTTGCTGCCCTCTCCTGGCTGTTAGCCATAATAATTTCCCTCAGCTAATGGTTGATGAACACCTGGAAGAGCAGAGAGGCCTTAGTTGTGTAAAGACTGGAGAGTTGTAGTTGTAGTTGGTTTCCTCTCTTCTTTGGTTTTGCtcactgttctctctctcatttattatgattgttgttTATTAGCTATaagactttttctttgtttatacaTATTGTAAATTTTGTAAACAGATTTGTAAAGTATTCACTTGTGGTACTGTGCATACTTGTTTGTCGTTGTAAGGTATGAAGAGTAGATAGTCCcagaagactttttttttaagtttgctgtTTTTCGGGCATCCTAAGTTATTacgttgatttgtttttgttttctttattttaatgaagagTAATGGTATGTTGAGTTCtgtataaaatgttgttgttctgATTAAATTCTAACTGCATGTGCAGTACTTTAAGAAATGTCTTCTCTTTGTTTCATTGCTTTTGTCTGGCAGTATTTGTTGTAACTCCCATTGTTAGAGTTGTGTGTTCCACACTGGGGAATATTGTGGTTTGGGTCGtaacagtgtgttcagtgttcatTGTAGTAATGCTGCACTCAGTCTCTCTTTacagtttattgtttattttgtgtttctgttgcttCAGTTGCCCCCccaactctctcacacacacatacactctcaccCACAAGCCcacagcccccccacacacatgctcacagaTACTCTCTCACACCCCACACAGTGATggccacacaaacacaaatcaacGCAGACATAGAGAtgtcaataaaacaatcaatcaataatacagaATGAGTGAATACTGGGCACAACGCCCTGCAGGGACACTCTACTGCCAGAGACAGCATCAGATcattgacaaaaacaacaacaacaacaacaacaataataataataataataataataataataataataataataatagtaagaaatgtgaaatatgggTAAGTTTTACTGTAGCATCACACTGATACTCtgcacagtgcagcacagcactCTACAGTACAGCAGAGTGCACTACAGTGTGTTACAGCAACATACAGTCCAGTGCAATGCGTtagtatacagtacagtgagtTGTAAGAGTTGTGTTTGTGAGATTATGAgagcatgtgagtgtgtgtgtgtgtgtgtgagtgtctgtgtgagtatctgtgtgtgagtgtgtgtgtgtgtgtgtgaatgtgagtgtgtgtgtgagtgtgtgagtatctgtgtgtgagtgtgtgtgtgtgagtgtgaggggGGCTATGCGGCACTACATTACACTGACAGAAACAAGAGAGAACTAGCATATCAttcatcttaataataatagtcatcaTAGTAACAATAGGAatagaaatcataataataatagtagttatAATATGAATAGTAAGTTCTCAATGTCTAAAATTGTGTCCTATctgatttattgcatttatacGCTCTGGAGAATAGGAACAAGATTCAAAAAAGAAACTCGAAAATCACTTCTCTAAGTTTGCTAATTAGTGCTAATTAGTGTTCTGCTGTCGTGCTGTATTGCTAGGGGAGCTACTTTGGGCTCTAATTGGGGGGTTCATTGTTGTGTGCTggggtgagggtggggggttgaAGTGCCAGGATGCAGGCAGGTCAGCTGATTGGACAGGGAGGCGCTTGCAGTCATTGGGCAGAAGGGATGGATGCAGGGGGGAGGAGCTAGTGACAAGGTTCCTAAGATGTAATTGGTGAAGTGGCCATTTGATTGACAGCCACATTAAGCCAACTACGTAGGCTTGTAGTTTGACCTCTATATACATACTGATACACTGTACAGAAAAagctacacacacgcacatgtgtatgtatacttAAATGTACCAGCATATATACACCCACactgctggactggactctgtctctgcagggcaGTGCAGTTGGTACGGGCAGTAAAGTCATCAGTATAGTGGCATTAATCAATATAGaaacttgaaataaaatgttaatcaaTACAGTGCTGTGAGAAAAGCCAGCCATGTCAGTCAGACGAGTCAAATCAACACAGCTGAGctgacacaaagacagacacacagacaaacacagacacacacacacagtcacacatagacacacagacacacagtgcacTGAAGAATTagacagtatatatgtataacgtgtgtgtgtgtgtgtgtgtgtctgtgtctctcagtccCCCCCAGCTCCTCAGGCCGCATTCTGTCGCCTCACAGTCTGTGTAGTGTGTCTTTCTCCACAGCCCAGCGTCAGGAACTCTATCAGCTCAGTGTGAAGGAGCTGCACCATCAGCAGCTGCAGCCCCTCGCCGACACCCCCTGGAGGGAGCACCTGGCTCTGGGGGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25336 lncRNA upstream 934 183757 ~ 188858 (-) True G20355
TU25385 lncRNA upstream 76268 259091 ~ 259480 (-) True G20395
TU25406 lncRNA upstream 121766 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 125186 308009 ~ 309826 (-) True G20424
TU25417 lncRNA upstream 127890 310713 ~ 317114 (-) True G20423
AMCG00006978 mRNA downstream 24753 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 30201 127488 ~ 137733 (-) True AMCG00006981
AMCG00006977 mRNA downstream 42771 113177 ~ 125163 (-) True AMCG00006977
AMCG00006979 mRNA downstream 72642 78452 ~ 95292 (-) True AMCG00006979
AMCG00006980 mRNA downstream 89522 66755 ~ 78412 (-) True AMCG00006980
AMCG00006988 mRNA upstream 12481 195304 ~ 198829 (-) True AMCG00006988
AMCG00006987 mRNA upstream 43272 226095 ~ 241460 (-) True AMCG00006987
AMCG00006995 mRNA upstream 134793 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 173795 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 183167 365990 ~ 379890 (-) True AMCG00006996
TU25378 other upstream 47501 230324 ~ 232494 (-) True G20388
TU25387 other upstream 76760 259583 ~ 260236 (-) True G20397
TU25464 other upstream 177870 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 226016 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 663106 845929 ~ 848289 (-) True G20609

Expression Profile