RNA id: TU25385


Basic Information

Item Value
RNA id TU25385
length 228
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G20395
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 259091 ~ 259480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggatcaaatacttttttcccctcactgtagatataATGTTTCAGATCATAAtacatcatctctctctctctctctctccctcagtgagGATGCGATGGAGTATTCAAAGGAATTTGTTACATCAGTGGTTCTGGGGAAGGACCTCGTACCCAGGATCGGTCTCTCTCAGCTCGAGGGGTTCCGGCGCCACCTGCTGGAGGTCCTGCAGAAGAGCAACAAGCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25336 lncRNA downstream 70233 183757 ~ 188858 (-) True G20355
TU25332 lncRNA downstream 76268 167934 ~ 182823 (-) True G20353
TU25406 lncRNA upstream 45109 304589 ~ 306860 (-) True G20412
TU25427 lncRNA upstream 48529 308009 ~ 309826 (-) True G20424
TU25417 lncRNA upstream 51233 310713 ~ 317114 (-) True G20423
TU25419 lncRNA upstream 51233 310713 ~ 317114 (-) False G20423
TU25422 lncRNA upstream 51233 310713 ~ 311502 (-) False G20423
AMCG00006987 mRNA downstream 17631 226095 ~ 241460 (-) True AMCG00006987
AMCG00006988 mRNA downstream 60262 195304 ~ 198829 (-) True AMCG00006988
AMCG00006978 mRNA downstream 115910 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 121358 127488 ~ 137733 (-) True AMCG00006981
AMCG00006977 mRNA downstream 133928 113177 ~ 125163 (-) True AMCG00006977
AMCG00006995 mRNA upstream 58136 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 97138 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 106510 365990 ~ 379890 (-) True AMCG00006996
AMCG00007001 mRNA upstream 149412 408892 ~ 413978 (-) False AMCG00007001
AMCG00007002 mRNA upstream 205089 464569 ~ 472311 (-) True AMCG00007002
TU25378 other downstream 26597 230324 ~ 232494 (-) True G20388
TU25387 other upstream 103 259583 ~ 260236 (-) True G20397
TU25464 other upstream 101213 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 149359 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 586449 845929 ~ 848289 (-) True G20609
TU25695 other upstream 586449 845929 ~ 848289 (-) False G20609

Expression Profile