RNA id: TU25417


Basic Information

Item Value
RNA id TU25417
length 3007
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G20423
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 310713 ~ 317114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTTATCAAACTCTTTATTGATGGATAGaaacccccgcccccccagtGCAAAGTCCAAACACACTTCTGCGTGCCAGGGTGATTTTCCCACGTGGGTGCGATGACATCCCGGTGCTGTAGAATGTTCTCTGGCCCCTCAGTGATTCGTGGAAACCTGGAGAGAAACcggaaacaggaagtgaacaTGGAAAGGCGTAGGAGGGGGGGggcacaatgtttttttaagccaaCACATGGATAGTATAATTGACAATGATTACTACTTCTTCCATTCATTAAACAACACCACTACAGAATACTGAAATAATCTCACATAGATCTGAAATATGCTTCATCATGGGTTCAGAAAGTTGTTGATCTTTTTCTGTagaatgtatgtaaatgtgtacCAAACAGGTCTATGACTAGAACACGGTCCAGCTGTTATTAAGTTAACGCACTCCCAACAAGAATACATGAAGTGAGAAGATGGAAAGGAGCTTGATATGTCAAACAGACAGGACTTCAAACAGCAGCACTCTGAGCGACACGGCCTGGTTTATACACGTACACTGTGTCTGTATGtggacacaacacacacatggcCAAACAGTTTTACCCATGAGCCCACATGGACCGGTACAGATGGCATTACTGTGGGACGCAAGCAGTAATGAATTATGAAAGAATTTTTATTGATAGTAATTAATCACTATCAATAATTACAACTGAAGTACCAAATATAATGATTTTGTTAAAAAGTGACCTAGACACAGGAGGAGGAGCTGGGAAACTGTAACAATGACACGGAGCACAGAGACCTCTACTTCGGCTGTCACTATTTTCTAGTTCAAACGCGTTTTCACTGTGGGAGGCTGCTTTCATAGTGCAATGAGTCTCTGTATGGCATGAAGATGAGTGACAGAGCAGCAGTTCTCCACACAAGCTATGCAGCAGGAACTGCACTGGatgcattttgtgtatttatttaactggattgatgttttataatttaataataaccTGCTTTGCTAGTTGTTGGCCAtatatggttttaaattataacaGACAGAGAGGCTTTGTATTACTGCAGTTACAGGAAattataaagagagagagacaccacagcctggccatagagacaggccgacacaggcagagctggctgcccagagaggagtggcactgtggtcactgagagacaggagaggtggacacagagaggagcagcACTGTAGTCACAGAGACAGAAGAGGTGGACTAAGAGAGGAGCGgcactgtggtcactgagagacaggagaggtggacacagagaggagctaCAAATTACACTGGAAACATGAACTTGGATCcaataataaagtacagtgcTATTCGGCCCTAAAGAAAGAGTTCACCCTGGCAGAGTCTCTGCTCATagtcagaaacacaaacacagacagatctGACCAGTACAGGCTCAgagaccacagcctggccagagGAACTGGGCGGCACAAGAGCACCTGGATCGCCAGAGAGACACGGCTGTGCGTCACTGTGATCTGGGAGACGTGGACACAGAGCTGCACTTCCTGCTGTCCTGccctaaatacacacacatcagaGACACCTACTGgccacaaataaaacataaaatcccTGAATTCAGTCAGCTCTCTGATGGCTGCAGACTCTGTGTCCTgctgggagaggaccagtgtgTCCCccgccacagcctgagggacagagTGGGACACCATTgtacaacaaaatcaaaacagtcGGGTCCGTTGCCATTACTGTTACATGATTGTCCTGACAATGTTTTTGATACATACATCAAATATGgattatatttcacttttattttagtGTGTATGGTATTTGTTCCAATGTATCTGGTCATGTTATGTCTGTCTTGTTGGATATTACATCTGTATCTGCTTTGGCTATACTGTGAtcggtcatgccaataaagcaccttttgaatttgaaatttgaatttgagagcgTCAGTGAGAGAGCCAGAGTGTCAGCGAGTGTGAGAGAGCCAGAGTGtcagcgagtgagagagagccagagtgtcagcgagtgagagagaacgagagagagagagcgagagtgtCAGCGagtgtgagagagcgagagtgagCCAGTGTCAGCGAGTGAGAGAGCCAGAGTGtcagcgagtgagagagagagccagagtGTCAGCGAGTGAgagagagagccagagtGTCAGCGAGTGAGAGAGagagccagagtgtcagcgagtgTGAGAGAGCCAGTGTCAGCGAGTgtcagcgagagagagagcgagagtgtcagcgagtgagagagtgtgagagaaagcgagtgtcagtgtgtcagtgagtgagagagtgtgagagaaagcgagtgtcagtgtgtcagtgagtgagagagagcgagagtgtCAGCGAGTGTGAGAGAGCGCGTCAGTACCTCAGACATAGATGCCGACCCACAGTAGCAGGAACAGCAGGCCGAAGCCCATGAAGAGCGACGCCACCAGCGAGATGAGCAGCTCCTTGTACACGTCCCGGGTGTACTTCGTGGACGTGACCTCATAGCTGCACTGGTCAAAGACTGGACACAATGGACACGTGATCTCTACATCGTAGCTGGACTGAACACactgtctctccctgtcccctCACTTCCCAGCTGGAGCAGTACACTGTACTGACACTGTCAGTCTGTCCACCCCGTTCATCCATCCCACACCCTAGACACTAGTCACAAACAGGGTACTGCTCTGGAGACAATAGTCCTGGCTGTGCTAATGTCGTAAGGATACACGAAGAACCAGGCGGTGAAGAACATGCCGATGGCCAGCAGCACCACAGTGAGGTGGGGGAACACGGCCGGGTTCACCGGGCTGGTGTAGCGAGTCATTGCCTCCaactcctgagagagagagaaagagagggagaaggattATGTATTCCTTCCAGGACAGCGCAGTGATGTGCATGTCTGTGGGAGAGTCAGTCTGCAGCGGCAGTTGATGTTGTGGAGGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25427 lncRNA downstream 887 308009 ~ 309826 (-) True G20424
TU25406 lncRNA downstream 3853 304589 ~ 306860 (-) True G20412
TU25385 lncRNA downstream 51233 259091 ~ 259480 (-) True G20395
TU25336 lncRNA downstream 121855 183757 ~ 188858 (-) True G20355
TU25332 lncRNA downstream 127890 167934 ~ 182823 (-) True G20353
TU25456 lncRNA upstream 29160 346274 ~ 353471 (-) True G20446
TU25486 lncRNA upstream 106220 423334 ~ 424778 (-) True G20465
TU25527 lncRNA upstream 228942 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 271211 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 278363 595477 ~ 595770 (-) True G20510
AMCG00006987 mRNA downstream 69253 226095 ~ 241460 (-) True AMCG00006987
AMCG00006988 mRNA downstream 111884 195304 ~ 198829 (-) True AMCG00006988
AMCG00006978 mRNA downstream 167532 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 172980 127488 ~ 137733 (-) True AMCG00006981
AMCG00006977 mRNA downstream 185550 113177 ~ 125163 (-) True AMCG00006977
AMCG00006995 mRNA upstream 502 317616 ~ 328711 (-) True AMCG00006995
AMCG00006997 mRNA upstream 39504 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 48876 365990 ~ 379890 (-) True AMCG00006996
AMCG00007001 mRNA upstream 91778 408892 ~ 413978 (-) False AMCG00007001
AMCG00007002 mRNA upstream 147455 464569 ~ 472311 (-) True AMCG00007002
TU25387 other downstream 50477 259583 ~ 260236 (-) True G20397
TU25378 other downstream 78219 230324 ~ 232494 (-) True G20388
TU25464 other upstream 43579 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 91725 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 528815 845929 ~ 848289 (-) True G20609
TU25695 other upstream 528815 845929 ~ 848289 (-) False G20609
TU25696 other upstream 528815 845929 ~ 848289 (-) False G20609

Expression Profile