RNA id: TU25456


Basic Information

Item Value
RNA id TU25456
length 616
lncRNA type inter_gene
GC content 0.55
exon number 4
gene id G20446
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 346274 ~ 353471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGATGTAAGCCAGGATTCCAGCCAGGATCTCCAACAGGAAAatacacaacagcaacacaaaAGCAGGCGTCTCTGCTCTTTGAAGGTGGCACAGCAGCCCAGGATGCCCGTCACCATGACGATAGCCCCGGCGACCACCAGGATGTAGGCAGTGGCTGCATAGGTGCTGGAGGAGAGCAGGCTGATGTAGTCGCTCTTCAGAACCAGGGTCCACACGCCCACCGCCATCACAGCACCCCCTGCCAGCCAGAAGAGGAAGTTGAAGGTGAACAGGAGGTACTTCAGACAGATCGTCCCACACGTCTCCTTCTTCTCATCATATGCCCCCATCCTGGACTGATTTGCAGACTATTCCCGGCGCCGATCTCTCTGTGGTTGGGTTTGTACGAGTCGTAGAAAGTcacctttcctctctctctctctctcctccccgtTAActgagcacacagacacagcgaGGCCCTGCCTCCAATCCGGCCGACAGCAGACTCCACCCAgcccgacacacacacagcttatCTCAAATTGACACAGTCTCTCAGTCTCACTGGTCTCTGTAGCTCTctctcaatcacacacacacacacagtttctctctctcaatgacACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25417 lncRNA downstream 29160 310713 ~ 317114 (-) True G20423
TU25419 lncRNA downstream 29160 310713 ~ 317114 (-) False G20423
TU25423 lncRNA downstream 29160 310713 ~ 317114 (-) False G20423
TU25424 lncRNA downstream 29160 310713 ~ 317114 (-) False G20423
TU25422 lncRNA downstream 34772 310713 ~ 311502 (-) False G20423
TU25486 lncRNA upstream 69863 423334 ~ 424778 (-) True G20465
TU25527 lncRNA upstream 192585 546056 ~ 546501 (-) True G20501
TU25534 lncRNA upstream 234854 588325 ~ 588602 (-) True G20507
TU25537 lncRNA upstream 242006 595477 ~ 595770 (-) True G20510
TU25686 lncRNA upstream 465504 818975 ~ 823764 (-) True G20604
AMCG00006995 mRNA downstream 17563 317616 ~ 328711 (-) True AMCG00006995
AMCG00006987 mRNA downstream 104814 226095 ~ 241460 (-) True AMCG00006987
AMCG00006988 mRNA downstream 147445 195304 ~ 198829 (-) True AMCG00006988
AMCG00006978 mRNA downstream 203093 140536 ~ 143181 (-) True AMCG00006978
AMCG00006981 mRNA downstream 208541 127488 ~ 137733 (-) True AMCG00006981
AMCG00006997 mRNA upstream 3147 356618 ~ 362294 (-) True AMCG00006997
AMCG00006996 mRNA upstream 12519 365990 ~ 379890 (-) True AMCG00006996
AMCG00007001 mRNA upstream 55421 408892 ~ 413978 (-) False AMCG00007001
AMCG00007002 mRNA upstream 111098 464569 ~ 472311 (-) True AMCG00007002
AMCG00007003 mRNA upstream 120387 473858 ~ 478272 (-) True AMCG00007003
TU25387 other downstream 86038 259583 ~ 260236 (-) True G20397
TU25378 other downstream 113780 230324 ~ 232494 (-) True G20388
TU25464 other upstream 7222 360693 ~ 362074 (-) False AMCG00006997
TU25476 other upstream 55368 408839 ~ 414126 (-) True AMCG00007001
TU25694 other upstream 492458 845929 ~ 848289 (-) True G20609
TU25695 other upstream 492458 845929 ~ 848289 (-) False G20609
TU25696 other upstream 492458 845929 ~ 848289 (-) False G20609

Expression Profile