RNA id: TU25705



Basic Information


Item Value
RNA id TU25705
length 358
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G20612
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 902919 ~ 903735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTGTCTGCCACATTGATGGGTGTTTCCAGTAGTAAGCTACCCCCTGTGGGGAGTGCTGCAGGCTCACCTCAATGATTTGTACTGTGTTGTTGAGCAGACTGATGACACAACTCTCCTGTACACACTGTCCACAGCACTGTCCTGGGGCGTCCTGGTACACATAGCCTGCCGGGCAGTTTTTGTCGCACTTCGTTGGTGTACAGTCAATGGTGTTCATCTTGGTTTTTGGGTCCACGTTAGAGCTGCACTGGCAGTGGTCACATGAGTTTTCAGGGACTTCGACTCCAGGCTGTATTGGATTATTGGACACAGTCTTAGACTAATGGAGGGTACGGGAGATTTGacctgttttcattt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25700 lncRNA downstream 54630 845929 ~ 848289 (-) False G20609
TU25689 lncRNA downstream 73395 829097 ~ 829524 (-) True G20607
TU25686 lncRNA downstream 79155 818975 ~ 823764 (-) True G20604
TU25537 lncRNA downstream 307149 595477 ~ 595770 (-) True G20510
TU25534 lncRNA downstream 314317 588325 ~ 588602 (-) True G20507
TU25707 lncRNA upstream 2861 906596 ~ 936502 (-) True G20614
TU25710 lncRNA upstream 10395 914130 ~ 920107 (-) True G20617
TU25778 lncRNA upstream 86820 990555 ~ 991999 (-) True G20676
TU25839 lncRNA upstream 474721 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA upstream 476775 1380510 ~ 1381110 (-) False G20726
AMCG00007031 mRNA downstream 2431 898264 ~ 900488 (-) True AMCG00007031
AMCG00007015 mRNA downstream 177958 724461 ~ 724961 (-) True AMCG00007015
AMCG00007006 mRNA downstream 232054 669164 ~ 670865 (-) True AMCG00007006
AMCG00007011 mRNA downstream 244006 654866 ~ 658913 (-) True AMCG00007011
AMCG00007005 mRNA downstream 262967 628775 ~ 639952 (-) True AMCG00007005
AMCG00007030 mRNA upstream 61771 965506 ~ 973794 (-) True AMCG00007030
AMCG00007032 mRNA upstream 191010 1094745 ~ 1113487 (-) True AMCG00007032
AMCG00007036 mRNA upstream 282906 1186641 ~ 1208036 (-) True AMCG00007036
AMCG00007035 mRNA upstream 361856 1265591 ~ 1285027 (-) True AMCG00007035
AMCG00007037 mRNA upstream 474229 1377964 ~ 1383579 (-) True AMCG00007037
TU25694 other downstream 54630 845929 ~ 848289 (-) True G20609
TU25695 other downstream 54630 845929 ~ 848289 (-) False G20609
TU25696 other downstream 54630 845929 ~ 848289 (-) False G20609
TU25697 other downstream 54630 845929 ~ 848289 (-) False G20609
TU25698 other downstream 54630 845929 ~ 848289 (-) False G20609
TU25725 other upstream 48501 952236 ~ 953062 (-) True G20630
TU26054 other upstream 1240981 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 1263575 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 4137924 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 4138785 5042520 ~ 5049520 (-) False G21426

Expression Profile