RNA id: TU25725


Basic Information

Item Value
RNA id TU25725
length 440
RNA type TUCP
GC content 0.52
exon number 3
gene id G20630
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 952236 ~ 953062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaacatGAGCCTTACCGGTCTTCAGCAATTTTAAGTCCATCCTCATCTGAAGAATCAGAGGACGAGATGATGGCCTTTGACTTGATCTTCCCTTTCAGAGATGGCGGCATCCGTTCCGGCTTGGACTTCTCAATCCTCTTGCGTTCTCGGGGTTTGCGCTGTTTCTTAGGCCGTGAAGCGCCTTCATCATCGTCACTGCCGTCATCACCTCCTTTCTGGGGTCTCCTCCTCTTTTTCTTGGGTTTCCTCTCGTCATCTTCGCCCTCCTCTTCCTGTTCGCTCCCACTGCCTCCcttccttctcttcttcttcctggGCACAGGCAGGTCCTCGTCCGAGTCGTCATTAACAAACTCGTCAAAGTCTGCTCCTTTCTTGCGCTACAGGGAACACAGAACCTTTCACGGTTAAAACTCTTCAAGTGTGCCGATCCAGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25707 lncRNA downstream 15734 906596 ~ 936502 (-) True G20614
TU25710 lncRNA downstream 32129 914130 ~ 920107 (-) True G20617
TU25693 lncRNA downstream 34407 845929 ~ 917829 (-) False G20609
TU25705 lncRNA downstream 48501 902919 ~ 903735 (-) True G20612
TU25700 lncRNA downstream 103947 845929 ~ 848289 (-) False G20609
TU25778 lncRNA upstream 37493 990555 ~ 991999 (-) True G20676
TU25839 lncRNA upstream 425394 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA upstream 427448 1380510 ~ 1381110 (-) False G20726
TU25945 lncRNA upstream 723242 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA upstream 769494 1722556 ~ 1727167 (-) True G20802
AMCG00007031 mRNA downstream 51748 898264 ~ 900488 (-) True AMCG00007031
AMCG00007015 mRNA downstream 227275 724461 ~ 724961 (-) True AMCG00007015
AMCG00007006 mRNA downstream 281371 669164 ~ 670865 (-) True AMCG00007006
AMCG00007011 mRNA downstream 293323 654866 ~ 658913 (-) True AMCG00007011
AMCG00007005 mRNA downstream 312284 628775 ~ 639952 (-) True AMCG00007005
AMCG00007030 mRNA upstream 12444 965506 ~ 973794 (-) True AMCG00007030
AMCG00007032 mRNA upstream 141683 1094745 ~ 1113487 (-) True AMCG00007032
AMCG00007036 mRNA upstream 233579 1186641 ~ 1208036 (-) True AMCG00007036
AMCG00007035 mRNA upstream 312529 1265591 ~ 1285027 (-) True AMCG00007035
AMCG00007037 mRNA upstream 424902 1377964 ~ 1383579 (-) True AMCG00007037
TU25694 other downstream 103947 845929 ~ 848289 (-) True G20609
TU25695 other downstream 103947 845929 ~ 848289 (-) False G20609
TU25696 other downstream 103947 845929 ~ 848289 (-) False G20609
TU25697 other downstream 103947 845929 ~ 848289 (-) False G20609
TU25698 other downstream 103947 845929 ~ 848289 (-) False G20609
TU26054 other upstream 1191654 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 1214248 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 4088597 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 4089458 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 4103725 5056787 ~ 5057406 (-) True G21429

Expression Profile