RNA id: TU25839


Basic Information

Item Value
RNA id TU25839
length 2655
lncRNA type intronic
GC content 0.37
exon number 1
gene id G20726
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1378456 ~ 1381110 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgcattccttGCCTAGAGATCCAGTTTGCTTTTGTACTGATTTTCTATGAACCCAGGACATCATGCCTCCTTGTGTTAGTCTAATTACAGTCATGACTTCAAATTACTGATGCGTTAAGactgttgtattatttatgattatggGATTCAATACAGCAATAATTTGTATCCAGGTTCCCTGACCAGCCACATTTGCAGCCTAAGAACAGAACAACTGTGGATAACTTTTGTTAGCAGGAATACCTGTTGTCCTATCATACCTGACATCATTAAAATACTATGCCAATACTACATTTGTATGGTAACTGaggtttttgtgaaaaaaagtattaaacttCCTGTAGGTATGGACAACATGTACATTTTAGACTGAGTAGATGTCTCACCTTATATAGGTATACAACAGGGAAGGAAGTCAGACTTTAAAAAGTTATGCAAAAGATAAACATGGGGAAAGTCTGAATTTAAAGTTGTTCTCAAACGTTTATCGCTATACAGTTTATGCAGCAAACAAGACGCTACAAAAGAGCATGGGCAAACACAGCTGATATAGGCTCCAATTACCTCCTCTTACCTCAGAACattgaaaggaaaatgttgACTTTATTTGGGTATTTGCTGTTaaggaggaaaataaacagaataaagcaATGGATTGATGGGGGGTAAAAGGTACAGTATATGAAAatagatttacaaaaaaaaagtaagaataTCAAATAAAGATTTGAAGAGGTTATATTGGtaaaatatactgaaaaatTTGATAGACTGTGCATACAgtatttgcagttttcaaataAGCACACAGATAAATAGGCCTGCGTTTGGCACGTGTAGCCCATATTGAATGTAACCCTTGGGGTGAACTAGTAGATTATTTTTAAGGGATTGTGAAAgctaaaacattttacagaattcTCTGATAGTCTGTCTCAGTCAGTAATGAGATCATAAACACTGTAATATGCTCAGATTAAGAAAGGGATTATGAGGTAAGAAATGAAGGCTTCAGCACAGATTTAAGCAAAGAGCCACAGTCTGTGGCAAATAGCCAGCTAAGACTATCAGATTGTACATAGCACATTCTTTACTGAATATTTAGCCATGGATCTGCCCTGAAAACAAGTCAAAGACTCACTCTAGTAAAACAGTCAGAAAAGCCATTGAAAGCACAGACAATTGCATAGGAATGGCAGTCATGTTAAATGAATGATTTGACCAACAGAAATGGATAACATCTGTAGTAATAACAGGACAATAATTGCAGGTGGCCATGTATAACAGGTGAAATGTCAGAACCCTTCCGgaagacaaaacatttaaatgggattctacaaaacaaacagaaactaaaatagACCACCTGATAAAATGAGTAATGGTCCATATTGCTACACCACCATATAAGAAGTTGATTGACATAgggcagaataaataaatgggtgTACTGTGTGTAAAGTTGCATAAATAGCAGGATGATTTAAGAAAGCACAAAGCCATTCAACCCACTGGAATTGGTGGCAAAGAATGattgaaaacaactgaaaatgacACCTGGAATGATTGATGAATGCTAAGATGTGAATGTAATACTCCaggtaacaaacaaaaaaatgtcccCTGCTTAAGTATAGCCTGCTAGGGCAACACATATTTTCAGTACGTTATTCCTATGgaaactgtaatttaaaacaagttctAAATGTTGTAAGACATGCCCCACTGATCGTGTTCCCTGTCACACATGTGTTCGGGATGTTTGCATTCATTATCATCACAGATGTGAGATTAATAGCCAGAAACCTCCCTCCCCTCCATATCTGTTCTAGGGGGCACTGAGAGATAcctctatggcaagccaaattgtcatttagagatatttcaaatacaattcaagatatcttaaactgaattgcagatatctcagactagctccatttcaagatatctcaaaatgacttcctgtgaaaatgttgtatgttttgtatgaacttcctgtgtattttaagatatctgaaataggacaggaggtcaatttggcttgccatataccTCAGAGGACCTCCATTCTGTTATTCTGACAGTTTCGTACATGTTACCAACCAGTCCTGTGAGTTACCAGAGTCCCTGCACAGACTCACATACAATTACTTCACATCTGcttggatttgtttatttggcaGACGGCCACTTCCCCAGCTGCTTATTGAGGACTGTATAAGAGTGGCCCTCTATCGAGTCACAATAGGAATGGACACGAAAATATCCTGCAAACTATTGTGTGTGAGCGGTTAATTTCAATAGGACAGAGTGGCATTGCTCAACCATAGTTCGAGACAGTCAGAATCCTCTCGAGctattatttcaaaatgccaGCAAACCTGTTTAAAATACTAGCTTGCACAACATATTATCCTGTTTACATGTTTTCAGTTCGGATGCGTAATCCTAATGCTATGTATTGTAACTGTCTGTAAACATCCATATGTTTTAGCTGAACATGATACACTTTGTGGATTTGAGCCTTTTTAAGTTCAACCTTTTTATTTGACTTAATCCCTGATTGTACATCCCATTACACTGTGTATGTGCTGAATGTAGTACGATATGTCATGTTTTGTCACTTATACTTTAGAAAATACAAACCAATA

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25778 lncRNA downstream 386457 990555 ~ 991999 (-) True G20676
TU25707 lncRNA downstream 441954 906596 ~ 936502 (-) True G20614
TU25710 lncRNA downstream 458349 914130 ~ 920107 (-) True G20617
TU25693 lncRNA downstream 460627 845929 ~ 917829 (-) False G20609
TU25705 lncRNA downstream 474721 902919 ~ 903735 (-) True G20612
TU25945 lncRNA upstream 295194 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA upstream 341446 1722556 ~ 1727167 (-) True G20802
TU26063 lncRNA upstream 790794 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 818943 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 819090 2200200 ~ 2308118 (-) False G20908
AMCG00007035 mRNA downstream 93429 1265591 ~ 1285027 (-) True AMCG00007035
AMCG00007036 mRNA downstream 170420 1186641 ~ 1208036 (-) True AMCG00007036
AMCG00007032 mRNA downstream 264969 1094745 ~ 1113487 (-) True AMCG00007032
AMCG00007030 mRNA downstream 404662 965506 ~ 973794 (-) True AMCG00007030
AMCG00007031 mRNA downstream 477968 898264 ~ 900488 (-) True AMCG00007031
AMCG00007041 mRNA upstream 13246 1394356 ~ 1411242 (-) True AMCG00007041
AMCG00007039 mRNA upstream 51313 1432423 ~ 1435307 (-) True AMCG00007039
AMCG00007040 mRNA upstream 96142 1477252 ~ 1500014 (-) True AMCG00007040
AMCG00007043 mRNA upstream 123191 1504301 ~ 1518409 (-) True AMCG00007043
AMCG00007045 mRNA upstream 151349 1532459 ~ 1570344 (-) True AMCG00007045
TU25725 other downstream 425394 952236 ~ 953062 (-) True G20630
TU25697 other downstream 530167 845929 ~ 848289 (-) False G20609
TU26054 other upstream 763606 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 786200 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3660549 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3661410 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3675677 5056787 ~ 5057406 (-) True G21429

Expression Profile