RNA id: TU25945


Basic Information

Item Value
RNA id TU25945
length 1412
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G20795
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1676304 ~ 1730479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGATTTTgctaagtttttattttattttttttggtttacaaaCAAAGGCACCCATAAATTTTCCATTAACAATGAAGGTCCAGCAATAGTCTCTTTTTATTTACCCATTTTACATCACTAAAGATGGCAAACCAGAGCTTTTCTATTGCAGTTGAATTGTgtacacagcaaaaacaaaaggggGATACATTCATTAAATGATTTGGGCACTACACAGTAATAAATTAGGCAGGATACCTATACTGTACTGGGGCAAGAACAACATATTACAACCACTTTGCAAGCAAAATAGGGTTAAACCATACTTAACACCCCCGtcctcacccccaccccacaagaaaaaaacacttactgaaaagaaaaaatacagatcaGATTTTAGTGTTTAATACACATGTGTAATGCCCTCTATTTTTGGATACTAGTATTAGCTTTGGGGAAAACTCCAAATTACAGCTACTTTTCATGGTTGATTCTTAATGGGATGTAAAGACAAATCAGTTGGGATTTACAGTTTACCAAATCACAATCTAATTTCTTGagagaattaaaaatgtgcaggtTCGCTCAGTTATACCAAGGGAACAACAATGCTTTCAATGCAAAAGGTATCAAATCATTGTTTCGTCTTCGATAAAGCTTCCAACAGGGTCAAATCGTTACTGCCTGGAGGATTGCACGTTTATGGTTTTTAACtctgaaattattttacacTGGCAAAATAATATGGGGAAACTGaaagaagaaagttatttgACTGGAAATGATTCTTGCATCCCTTTCAGATATGGTCCCCCATCTTATaactaaatacacaaaaatgacattatacttcaggaaaaaaaaaatgtatattgatgGATCAACAATATtctgaatatgcaaattaattgCCATTCGGAAATTACACAGTAGTTAGCtttgagcattttttttttcttcagttgtgcAAATATTTAGGCTGAGGAAGTAGAGTAGTATTTACATTCTGAAACACTAGCTTTAGGAGGTCTAGAAAAGTTACCAttaatcaaagaaaaaacatctcaaaCAGGATCGCAAATAAATTGATATAATGAATGTTATGAAACAACTGATCTACATGGTGTTACATATTCTGTAGATGTGGTTAAGCTGCAGATGTACAGTATCTGAAAATAAGAACTGGCTCTTAATGAAGAGGGTATAGGAATCTTCCAACAAGTTTGTTCTTATAGTTTacttgaacatttttttttcctttttgtaaataaatacatcacttcatatttttctaagcacaaaaataaaagtttcttCTATAACTCAGCTTTTGAACAAACCTCTCTAATTTTAAAGTTGATTCGTAACTACCTAAATAGAGTTTTACACAAACCGGTTAGAAAACAtagatctgtttttttttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25839 lncRNA downstream 295194 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 295194 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 684305 990555 ~ 991999 (-) True G20676
TU25707 lncRNA downstream 739802 906596 ~ 936502 (-) True G20614
TU25710 lncRNA downstream 756197 914130 ~ 920107 (-) True G20617
TU26063 lncRNA upstream 441425 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 469574 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 469721 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 556345 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 696680 2427159 ~ 2427421 (-) True G20947
AMCG00007046 mRNA downstream 22992 1637115 ~ 1653312 (-) True AMCG00007046
AMCG00007044 mRNA downstream 49645 1599935 ~ 1626659 (-) True AMCG00007044
AMCG00007045 mRNA downstream 105960 1532459 ~ 1570344 (-) True AMCG00007045
AMCG00007043 mRNA downstream 157895 1504301 ~ 1518409 (-) True AMCG00007043
AMCG00007040 mRNA downstream 176290 1477252 ~ 1500014 (-) True AMCG00007040
AMCG00007051 mRNA upstream 25111 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007054 mRNA upstream 29015 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007053 mRNA upstream 91472 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007052 mRNA upstream 114176 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007060 mRNA upstream 184823 1915302 ~ 1924883 (-) True AMCG00007060
TU25725 other downstream 723242 952236 ~ 953062 (-) True G20630
TU25697 other downstream 828015 845929 ~ 848289 (-) False G20609
TU26054 other upstream 414237 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 436831 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3311180 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3312041 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3326308 5056787 ~ 5057406 (-) True G21429

Expression Profile