RNA id: TU25954


Basic Information

Item Value
RNA id TU25954
length 3925
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G20802
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1722556 ~ 1727167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATATCTTGATATACACCATAACCACtatattgtgaaatgtaaactatatattattttaccaaATTTTCCCAGTGGAAGATATTCAACACTTTAGGTTttcctgctttgttttcattaagtATATGATCATGTTGAACCAGACAAAGTGTATGACCGCTTACTTGTTCAGATGTTTCCGTGCTGCAGGAAGTCCAGAGAGCTCTTCATTCAGCACATATTTTTTGGTTCCCATGCAATAATTCTCCATGTACTCAGCCCAGTGTAACTGCCTGACATCGAAGTTAAAAAACCTTCTTGTCCTCCGTGTTCAGCTGGTTCAGAAGCATGGTGGTGTTCTCAGTGTTCCACACCCAGGAGTGGCTGGTGAAATATTCCAGCAGCATCATGGCTTTGTGGAGGCGGGTGATCGTTTTCATCATTCTAGATCATGTCAAGTTACACAGAAGCAAAATGCATCATAAACAGTAACAAAGCGAACACCCCAATTCTCCATTTCACCAATCCAGGGTGGATGTCTTTTAAATAGCTATATAAAATCTACAAACAATTCTGCACCATCTTCTAAACATACTGGATTCTGTTAAGACGCTCCTAAAATGTGCTTGCCATGACAGGAATCAAAGCGTTGACTTGCCTATGGTAAGGAGGTGAAATCTATTGCGCACACAGCTGTCAAGTCTCAAATGCAAAAATGGCAAAGTTATGTAATTAGTGTGCAAATCAATGTCTGTTATGTTTAAGAAATACAGAATTGggagtttttaaaatgtaagaactAAATATAGTCACACACAGAACAACTGAAATGCTGGTAAATtgcaaaccattaaaaaaaaaacaaaaaaaactattatttaggaaaaatggggggaaaaaatatgatAGTTTACTAGAGCGTTTACttcaactacaaaaaaaatcaccatGGAGAATACTATATTCAATAACAGTGAATCCagtattttgaaaattgaaacagACAGGAGGTGCAcagctattttatttatttttaaaaagagctTTTTATGCTAGTAAATATTATAAAGCTGGACTGGTTTACTGGAGCTAGTCAGTTTTACATACAgccttcagaaaacaaatacaaatcaatgcTCAAGGTATTCCTGTCCCAACTTGACATCTGTGTTTTCATGTCCAAGACTACATATAAAGTGACACTATGCTTAAGAAACATATACACCATGTCCAGTGGAAACAGGAAGACCTGTAAAAAGTTGGAGAGAAAGTGAACCATTTCAAATGTACTCATATTTTATGCTAAAATGCCACTGATTTATTTAAGACGCATGTTAATTTGATTGGCAAAATACACTTTCCTTGTTCACTTCCCCTCCAAAATACACTCCCATTCTCATGGACCTCAGTTACAAATAATACTAAACTGCAAACATCTGTGAAATGATTGTAATGAAACAATGTGAACATTTTTCTAGTCCTTCCAAATCAGCAAACTCTACTCAAAAGCCCCCCTTTTCAATGCGTGTTATTTCTTTTGAAAGGTGACCAATCCCTTACATTTCAAGAGGGGGGCAGAGCATGAAGGGAGGATGGGGGGGGAAAATGATGTACACATtcaaacaatgcaatacaaacgAGGGGACATGAGTTAACAAAACAGCATCCCTGAAAACATTCATCCTTCATGTTTGCTCTGCTTAGTTATTATAATTTAGAATGCATTGTCAGGTTTTAAATTACTACATTTGGGCCTATGTTTCTATCTAGAGGTGATTAGAAAAATGTAACTAAAGACAATGGGAGCTGTTGATTGCTGCAAATTGTGATCGAGATATAGGTTTGCCTTGCCATGGACAACTGATTTTTCATATCAATCAGCGCTCTTTTCATTGAGGGCGGCCAACAGATTGCCAACATGCTTGAAAATCATTTGCTTTCTTAAGAATAAGGTTGGACTGATACCACTTTCTACAAGACACTTCTCACTTAACTCTAGTACCTAAATCTGAAATGCAGGGTTTCACAAGTTAAACAGGCAATCAGTTTTTAAAGTACTCATGATAAACAACTGTTATTCCCATATGGTGCTGCCACCTTCAAATATACTGcagcacattttattaaatagtgCGTCATTCCTTAACCAGAGAATGGATTTCATCAAGTGAATTTCCTTTGTTCAAGTCAGATTCAGAGACAAATTAATTTAACGTCTTTCTATAGCAGttctataattataatacaattaatgttAACAGTACTACTGTAAttccaaagaaaacaattttTTCCTAGATATTCGATAGCTAAGACTTCACTATAAACtggtttcttttttcagatactattaaaagcttttcattCTTAGTGCGCAATTTTGCATGGGTTTCATGAATAACTCAAAAAAGCAATACACTTGAACCCGACAAATAATAAGCAAGACATAGATTTTACATATATTAGTCAAAGTCAAATGCTTTCctgtacataaaaatgtattaaaaccaaGAAGTAGGAATCTCTTCTGTGGCCAATCgatttttcctttcttaataATCTTAGGCGTAGTCGGTGAACATTAATTGAAAAGGTAGCTAAACCAAGATGGTGTCCTCTGTACAAACAAAGTCTCTGGTATTGGTCCAAAAAAATATAGAAGGCCAATAAAAATCGGGAAACCAGCCAATATTATCAAATGCTTGGTATCCTGTATCAGTCAAACCCTACTGAAGAATATGCAAGTCCCTCAGAACAGTGCCAGATTGAAAGAGGAGGAGAATGGCACTGTAGCAGATAGTTTTGAGGTCACGCCTGAAGACTTGATGGCATGGCTTACTTAAGGAATGGCTTCTGTGTTACTTTGACCCAACAGAACCAACACGGGGAATGAAATGGCATTAATTTGCATCACCAAAGTTCAATCTGATCACACtcaatgcaaaacaattcaACTGCATGGTTTTAGTTACTTCGTGGGAGATTATGGTTCTTTGTCCAGTTCTATTCCCACAATGCATTAGTTTAATTATCGGACGACAAAGCCATATTCGACATGCTCTCTCTTAGGAAGCGAAACCATTCCCATGCGTCATTTCACAGCAGTGTTAACAGCATGATGCCAAGTCCAATGCCATGAAGTCAAGCAATCTTTGCTTGCCTCCTCCACCACTACAAAACCAGCACCAGGGTGGACTGCAGCACTGTTCACCTTACCGGGGTTTCTGACCTGTCAACCTTAGATACCCGTCATAGAGTAGTGCAGGCACTGTGTGACTGACTGTGGTCCAGTACTGATTCGTAAAGGGGTTGGACCGGAGGTTAACATTGGGGCGCCTGAAAGCCTGTTCTAAGGGGTTCATCTTGAAGGACACATTTACATAATACtctgcagaaaaaatatatcagagCTTTAAACatgaacagatttaaaaaaaaacaaaaaaaaaaacaggccatACAGGTAAGAATGCAGAACCATGGCAAGTGGATTGTCACACCACCTGTAGGAAGCTGATCCTTCAAAAGAGGATTTGGTCTCTTTTGGCAGTGTTATCTGCCCAATTCAGAGACATTGTTCATCCTTGTGGTTATACATCCTTACCCCTATGCATCATCAGACACATGAATACAACAACATTGGACTGCACTGGAAGGGCAAATGGGCTGAAAGGATAATACAACAGTGGGCTAAGCAAGTCACATTTACCTTGGTGTTCTTCCTGTTATCCTGAGGTAGAGATCATATAGGAATGCTGGTGCCTTATGGCTTACAGCAATCCAGTACTGATAGATAAGGTGATTGGATGTGAGATTAACATTGGGCCGTCTGAAGGCCTGCTCGAGAGGATTCCTCTTGAAAGTGGATATAACATGGTACTCTAAGAGAGAAAAATGTTGCAATAGTATAAAGTTTTCAAAGTATCTCTAGCCTCaagtttggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25839 lncRNA downstream 341446 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 341446 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 730557 990555 ~ 991999 (-) True G20676
TU25707 lncRNA downstream 786054 906596 ~ 936502 (-) True G20614
TU26063 lncRNA upstream 444737 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 472886 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 473033 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 559657 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 699992 2427159 ~ 2427421 (-) True G20947
AMCG00007047 mRNA downstream 24723 1659504 ~ 1697833 (-) True AMCG00007047
AMCG00007046 mRNA downstream 69244 1637115 ~ 1653312 (-) True AMCG00007046
AMCG00007044 mRNA downstream 95897 1599935 ~ 1626659 (-) True AMCG00007044
AMCG00007045 mRNA downstream 152212 1532459 ~ 1570344 (-) True AMCG00007045
AMCG00007043 mRNA downstream 204147 1504301 ~ 1518409 (-) True AMCG00007043
AMCG00007051 mRNA upstream 28423 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007054 mRNA upstream 32327 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007053 mRNA upstream 94784 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007052 mRNA upstream 117488 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007060 mRNA upstream 188135 1915302 ~ 1924883 (-) True AMCG00007060
TU25725 other downstream 769494 952236 ~ 953062 (-) True G20630
TU25697 other downstream 874267 845929 ~ 848289 (-) False G20609
TU26054 other upstream 417549 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 440143 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3314492 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3315353 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3329620 5056787 ~ 5057406 (-) True G21429

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU225186 True 309 lncRNA 0.42 1 NC_048566.1 87311860 ~ 87312168 (-)