RNA id: TU26063


Basic Information

Item Value
RNA id TU26063
length 580
lncRNA type intronic
GC content 0.43
exon number 1
gene id G20870
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2171904 ~ 2172483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGCAAGTTAATGAAACTGTCGATGGCTGGACCACCAGTGATAATTCTCCTCCTAGAGTCAGCAGGTCtacttctgtttcttttgaGTCTTcaactgtaaacaaaaatgtaacccTCACCACTTTTGTTACACAGTTATCAACAAGTGCACCAGTGACCTCAATTAGTACTGATGCAGGGACAGTGAGCACTGACAACCTACTGAGTTCTGAATGGACCCCCTCATCAATACTGTTAACATCAGCCACTGCAGCAACTTCAACAGAAGCAGTAACGCCTTATAGCACAGGATCTGACACTCGTGCTACATCTGTGAATACTATGTCTTTTTCTGCTTCTCAAGAACCAGTGACTTTGATGAATGATTTAACGACTTCAGCTTTAGTTTCCTTATCAGATGCTTCTACGAGAGGTGTGACACATCTCAGTACAGAAGCTCCTACTGGTGAGGTTGTAAGCACTGTAGTGTATCAGACTTTACCCACCTATGGATCTTCATCCACAGCAGATACACATAAGACAACAGTAGCCAGTGAATCTTCAACAAGTGCCTTTATTACACTAGAATCTGGAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25945 lncRNA downstream 441425 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 444737 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 790794 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 790794 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 1179905 990555 ~ 991999 (-) True G20676
TU26116 lncRNA upstream 27570 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 27717 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 114341 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 254676 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 375521 2548004 ~ 2548289 (-) True G20965
AMCG00007060 mRNA downstream 247021 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 309731 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 347367 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 377265 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007051 mRNA downstream 415562 1755590 ~ 1756342 (-) True AMCG00007051
AMCG00007058 mRNA upstream 32645 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007057 mRNA upstream 65684 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007062 mRNA upstream 117920 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 129900 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 154129 2326612 ~ 2346701 (-) True AMCG00007065
TU26061 other downstream 1334 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 26089 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1218842 952236 ~ 953062 (-) True G20630
TU25697 other downstream 1323615 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2869176 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2870037 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2884304 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3644326 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3835157 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile