RNA id: TU26116


Basic Information

Item Value
RNA id TU26116
length 2574
lncRNA type read_through
GC content 0.37
exon number 2
gene id G20908
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2200053 ~ 2308118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCTCGGAGAGACGTGTTAGACTCAGAGCAGGAGCGGGAGGATCGGCAGGGCTTGAGGGGCAGCCAGTCCCTGTTACACCGCAAAAACATGGGCTTTGCCGCTCTCGCAGCCCAGAGCAGAGCGACCTTCACCGAAAGCAGAACTCATTAGCTACACACTGGACTTGGTCTGACCCCGCTGGGTGATTTTATATGTTGTTCAGAAGACTAAATGTGAGGAACAATGCTTTTGGTCAGTCAGATTGCAACTCCATACTTTGCTGAATAGAGAGTTGAAGGATCGTTCGTGCAGAGCTTTCATATCCGACCCAACTTTGTAAGTTTGATTTCTTAACCACTCCAACTCCTTATTTCATTGAGGACAGTGTGTATAACACTGCGATTGTGCCTTGAGAATCTGTGGTTCAGATGACTGAATTGATGCTTGCCTGTTCTCCCCCACTGACAGTGTGGTATTGTTTGAGAAGGGgatattattaaaaatcacaaatctaaaaaaagaaaaaaaaatcaaaggtcTGCAAGAGAAACCTAATGAGATTAACAGTGATGTATTCAGCCACTTGGAAGTGGCAGCTTGACCAAAAATGACCGTTTCATGCTTCTCATAGTCATTCCGGGGATCGAAATACTGCAGTCCGAGCTATAGTAGGAGAAGAGCACGCTACTTCTCAAGATGCTGCCACTGAGGAATTGTCAGTTTCCTctgttgtttcacaatgtaTCGCCCACCCACAAACCATCAGCATGTTACACCATGGCCTCCCACCAAGAACTGCTTTCACCACTCGCTCGGTTCATCTTTGCCTCTTGGAATAACAGGAAGGTACAAAATTTGCTTCATTTGATCAAACTATTTCTGCACTCTAGAGCCTGTGCTGAAATCTTTCCCAAGAGATGCTTCTAGTTACTGCTGGAGCAAAGAACCTGTAGGTGCCCAGAGCTAATTTTATCCTTAATTTGAACATGCAGAACCAAATCGATAtctcaaagcaaacaaacaaaccaataaacaaaaatgttcctCTGGTCTGTCATGACTAGCAAAGTAAGTAGATATGCAGAACAGTCTGTGGACTTGTTCTCAGTGCTTAACATAGAGGAACATTATCCAAACACTTCTGGGGGAGGGGGATGCTCTGTGGTAATTGGTGAAATGCTCGTATGAGGTGTATTGCCATGCAGAAAGTGCTTCTAAGATCACAGTAGTTGCAGGAAAAAGCCCACCCGTTCGCCTGTATAGAAACTAACAACATGAATGGCTGTAACTGATGTGTTGTACCTTACTGGTTTGTAATTAATAAGCCACATTTGTTGCCTAAATCAAAAAAGGGCCAAAGCTGTAACTGGAAGCAAGCAGTCTGTTGCTATTTCTAAAACcattgcatttcagtttatGACTGCTTGCTCTTCATACCAAACAACAGAAATGGAGGTCTCGGTTGAATGTAGGCATTTCACATCTAAAAGTGCATGACCATGATGTAGTGACACACGATGggttttttctttcaatcttGTCTAAAAAGCATGTGGAATTTTAACTGTATTTCGATTCCTGTGTAATGGTGTTTACCAGCAAATATGCCTGCACAAAATCTCCATGTTAGCCAAAACGAAATATAGATTGCAGTGGGTTCAATTGTCAATAATTCAGATTGCACAGACAAATCCATCAATCTACCGGTTTTACCAtctaaaaaaaatgatttttttaaacatttctattttgaaGCATAGTgaagttttgtaaaataaaaaaataaaccaaacactgcagtttttaaacttccattataatatttaattttaaattttgcaaattattttatatatatatatatctgattGGTATTACTCTTTTAGAGATGCTTAAGAAGTTAATTCAGGGTCTTTGTATTAATCCAATGTGCTACTGTATTAATCTTAAATCCTAACTACTTGGTTTGAttgctttagattttttttattattattattattattattatttcccttttattttcaaattagctgtgtttgtaaaagttaatTCACGCTGCAAGTTATGGAATAATCTGTTTAGATTACACAGCAAATAGACTTGATAAGTTTGAACTgttactgttttaatatttgtagatttttgtggctttttcttttttttgcttttgattttatgCTACACTAGTTTGCCATGTAGCAATTGCACTGtgcaatatttacaatatgaGGACTGGGAAATTAAATTTTATGGATGTAATGTCTCTTACAGTTTGCGATAGTATTTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTATTGTCAAGATtcactttgaattaaaaatatctatTGCTGCAGCAATTGGCTtgtgattattttctgaataattgTCGTTATTTTCGATATAATAGATGCAATGATTTTTAAATCGCCTCCATTCAGCTACAATGTGCAATCTTAAAGCGTAATACATGTAAAGGGCCAATAATCATCgcaatatttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26063 lncRNA downstream 27570 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 469574 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 472886 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 818943 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 818943 1380510 ~ 1381110 (-) False G20726
TU26123 lncRNA upstream 32264 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 172599 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 293444 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 374537 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 390345 2644905 ~ 2663649 (-) True AMCG00007072
AMCG00007059 mRNA downstream 3198 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 275170 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 337880 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 375516 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 405414 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007062 mRNA upstream 35843 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 47823 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 72052 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 95478 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 121576 2376136 ~ 2382023 (-) True AMCG00007067
TU26061 other downstream 29483 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 54238 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1246991 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1351764 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2787099 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2787960 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2802227 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3562249 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3753080 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047597 True 7933 mRNA 0.45 16 NC_007136.7 15287036 ~ 15351444 (+)
rainbow trout (Oncorhynchus mykiss) TU143455 True 1877 lncRNA 0.42 2 NC_048566.1 24250939 ~ 24253089 (+)
striped catfish (Pangasianodon hypophthalmus) TU143455 True 5166 lncRNA 0.38 3 NC_047601.1 25677257 ~ 25682477 (-)
bowfin (Amia calva) TU143455 True 270 lncRNA 0.52 1 CM030135.1 2609143 ~ 2609412 (+)
mexican tetra (Astyanax mexicanus) TU143455 True 784 lncRNA 0.35 1 NC_035908.1 24907148 ~ 24907931 (+)