RNA id: TU26117


Basic Information

Item Value
RNA id TU26117
length 292
lncRNA type read_through
GC content 0.31
exon number 2
gene id G20908
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2200053 ~ 2308118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcttttttttttttttttttttatgCTACACTAGTTTGCCATGTAGCAATTGCACTGtgcaatatttacaatatgaGGACTGGGAAATTAAATTTTATGGATGTAATGTCTCTTACAGTTTGCGATAGTATTTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTATTGTCAAGATtcactttgaattaaaaatatctatTGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26063 lncRNA downstream 27717 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 469721 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 473033 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 819090 1378456 ~ 1381110 (-) True G20726
TU26162 lncRNA upstream 119041 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 239886 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 320979 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 336787 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 594444 2902562 ~ 2903620 (-) True G21020
AMCG00007059 mRNA downstream 3345 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 275317 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 338027 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007053 mRNA downstream 375663 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007054 mRNA downstream 405561 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007065 mRNA upstream 18494 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 41920 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 68018 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007070 mRNA upstream 154036 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007071 mRNA upstream 288960 2597078 ~ 2629005 (-) True AMCG00007071
TU26061 other downstream 29630 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 54385 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1247138 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1351911 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2733541 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2734402 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2748669 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3508691 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3699522 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU211568 False 1044 lncRNA 0.35 2 NC_035914.1 3994280 ~ 4005991 (-)