RNA id: TU26123


Basic Information

Item Value
RNA id TU26123
length 1456
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G20914
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2286824 ~ 2288618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNagtatatcatatcatatggtttcacatgatctacagctgcagttgcatgttcaacaAATTCCAATAAATCAGTAAGACATGATNNNNNNNNNNtaaacccatgttgactatctccaaatTAGATCAGTAATTTCTAACATTTCAGGCTCTACCACGATGTCAACTCTGTATATTCTAAAGCCTCCAAGTATCTGAATGTTAAAAgcttgttaaaaacaaaatgggggTTCAAATGTGTTctgatggttaaaaaaaaatgtagagaaCTACAGCGATCACAGTATTCACTGCTTACTGCACGTTGCATTTCTCCTGCTCTGCAAAATGATATTCCAGTGAATCCGCGAATGGAAACCACATTCAGTCGTCTGCTCAGTAAGCCTGGCAGACCTTACATGAACTgaatgtttgatttaaaaattgttttttttaaatacattattttgtgtacattggtacattttttttttttttttttaattaaatagtgtCACTTAAGGAGtagaaatctgttttatttttagaacagaAAAGTGATGTGTGCCATTTTAGGTACATTCAAGATTTTGgcccatttattttattttagagtgAGAGTGTGTTCTCCTACAATGTAGGTGAAGTTTGCAATTTGATAGTTATCATTTACTGGGAACAGATATGCTGTTTTGCTTATGTAATAACCATGTGGCTTCGTTCAAATCAGCAgctttacacaaataaaatagttcCAACCAGagcttgatttttcttttttatttgaaggaAATTGCTTTGCTTCTTTTGACTACAAAACAGAATTACTCAACTTTGCCATAAATATTGCAACTAGTCATGGCAAACTCAGAACGTTGTGTCAAATTAAGGTTGGTAATTAAAAACTTTATACAGTATAAGCCAcccagtttttaaaataaaactgttcaaaaaaaaaaaaNNNNNNNNNNCAAAACACAAGACTCGAGATGCGTCAAACAGCAGACAGAATGAAGCTTAATCCGTGTTCTCGTCAGCGCCTCCAGACCCCGAGGAACGCGCTCAGAGGGGCGGTTGTACAGTGACACTCTCAGCACAAGGTATCCCTCGTGCGCGTCTGCGCTGAACTGTGCTTTTGGAAGAGGCACAGCCTTGTCTCCCTACAGTCCTccgggggtggtgggggggtcgAAGGAAGGTCCTTTTAGCACATTACACGAGAGAATGACGTATCCTTCAGTGCACAAGAGTCTCTCGCTCCAGATCCCTGGCTGGGCTGCTCATCGGATCCTCTTCTGCTGCCGTGCCCTGTAGATGTCGTGTAGGGGAGGGGCGATGGcccctttctcctcctcctcgtcaGAGTCGGCGTTCGGCCTCTTCAGCGCTTTGTTGACCACTGCGTTGTTCTCCACCGGCCCGTTCCCCTCGGACACTAACTCAGGCTGCCGGCCCGTGATGATCTCCACTGCAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26116 lncRNA downstream 32264 2200053 ~ 2254560 (-) True G20908
TU26063 lncRNA downstream 114341 2171904 ~ 2172483 (-) True G20870
TU25945 lncRNA downstream 556345 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 559657 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 905714 1378456 ~ 1381110 (-) True G20726
TU26162 lncRNA upstream 138541 2427159 ~ 2427421 (-) True G20947
TU26186 lncRNA upstream 259386 2548004 ~ 2548289 (-) True G20965
TU26198 lncRNA upstream 340479 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 356287 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 613944 2902562 ~ 2903620 (-) True G21020
AMCG00007057 mRNA downstream 42392 2238167 ~ 2244432 (-) True AMCG00007057
AMCG00007058 mRNA downstream 68679 2205128 ~ 2218145 (-) True AMCG00007058
AMCG00007059 mRNA downstream 89969 2142675 ~ 2196855 (-) True AMCG00007059
AMCG00007060 mRNA downstream 361941 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007052 mRNA downstream 424651 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007062 mRNA upstream 1785 2290403 ~ 2297881 (-) True AMCG00007062
AMCG00007063 mRNA upstream 13765 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007065 mRNA upstream 37994 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007066 mRNA upstream 61420 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007067 mRNA upstream 87518 2376136 ~ 2382023 (-) True AMCG00007067
TU26061 other downstream 116254 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 141009 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1333762 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1438535 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2753041 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2753902 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2768169 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3528191 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3719022 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile