RNA id: TU26778


Basic Information

Item Value
RNA id TU26778
length 7001
RNA type TUCP
GC content 0.42
exon number 1
gene id G21426
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5041659 ~ 5049520 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACTAAATGAAACACAGTttccaaacattaaaaagcacGCCCAAAGGATGCTTGTTTTATTCAGGTCCACGTGTGTGTGAACAAGCGTTCTCAGTCATGAACTACAACAAATCCCATCACAGGTCGAATTTAACAAATGACCACTTGTCAGCTGTTCTGAGGATCTCCACGTCACAAATGACACCCAACTTTGATGCCCTTGCCCAGAGAGGTTGCCAAACCCATTGCTCAAATTAAGATTCAAATCTCCAAGACTGGGGTAGGCAAGACTTACAGTTTTTTCTCTACAATGCATTTGGATACAGGCCGTTCATTATGAACCAAATTCTCTGACTATACAACTCAAacggtttgtttttttaaatagtgctGTATATCAGTAATTTGCGGTCATATACAGTACGTCATATATGCCTACTTTTGTTTCCAGTCTTATAATCATCCCTTTAAGTTTGGACTTTTTGTGGCTGTGAGTTtaactgtactttaaaatgGTAGAGATGTGAGAACTGCCACTAGGGAtgggggtttgtgtgtgtgagttttatCATGCATATAGTATGTGGCCCTTCACTTGGTTTCAAAAACTCCAAAACGTTTGCCCACCCCTGTTCTAATGTGATACTTTAAACTATACATCGATTGCCAGGCGCCACAACATTAAATGTAGATTGAATAGGATGAAGAACTCTCAGAAACTCATAGGAAGTGTTTATCGAAGGGAAACAATTATCCTTATTTAAAGGACAAACTGGACTGAAGCCAAACATCTCTAATATCCAGCATTTAAACCACTCTGATGCAGGACATACAGTATCAGAACTTTTATTCCCACAGCATTTACTATATTCATCACATTTCAGTTTTCGTCATCAAATAATAACATGGAGCACTCTTTCCAATGAAGTCAGAATTGAACAGCATTTGAAATGTTGCGGTCAAATTGCAATACTGTAACAATTCACGATCGTCCcatttccaatttaaaaaagggTCATAATCTCTAAAAGTATTTTTACTATATTCAGACATTTTGATTTTCACAAACCTTTCAGTACACAGATGATCAATAACCCAACTTAacaggggaggaaaaaaaaaacgaccatttgttttatgtttcccgttttttttaattttattttattattatataggaTCTTTGGTGTTCCCACAGCACTTAGTTGCACTTTGACTATTATTCTCCGTTTTGCATCTAAAATAGTTACAAAAACccttaaatcacattttttcctacaaaagaaaaacaaaacaaaaacaagacactCTCGTTTTCACTAGAAACTACACAGTCAGCTGTTTACATGCAGTTGAGGGATAGAAAGACACCAGGGACTTCGTCTGTCCTGCACAAAACACCGCCCCATCATTTGGAGGTACACAAGACTCCAAATGATGGCGCAATATTTTCTCTACTGATGTTTTAAGTCGCAAATATTTTCTCTACTATTACCTTTATCCTATAAGCAAAGTTGTGTGGTTAACTGTTGTAGACTTAAGCAATACCGGTGGTcttttcatgatttaaaaaaacaaaacgagtGGTTAGCATGAGATTAATGCTGAAAACCTTATGTTCAAGTTATGTATTGTGCAAATccaattacacacattttaaaacaaaaattaaaaaccagaaaagaaaataaaaccttgcaCATCCAACGCCTCGTGACAGGGTTCATCGCACAACCACCAGAGATCGTCTGTATACGTTTAACGTCATACAAAGATATGAGACTGGTAATGGTGTATTGGAAAGCAGTAGCAGAAACTTTAATTACACAATGTTTACCTGTTGTTATTTACAGCAATATGATGTGATGCAAAAACTAACCTTTATGACAATCGCAAACCTAACTGGCTGCGAGTGCTTTACTAAATCCAACCGTTGTGTCGTAGCAGTTTGATTGGGTTCGCTGGGGTCCAGCCTGGACATCCGGATGTGTATTCAGTTCTCACTCTGAGCTGCTGTAACGGCTCAAGATGATATCAGATGATAATGCACTTAAATTCTGAAGCGTCATTGTGAATTCTGAGAAAAGACCGGGCTCAGatttacacaagaaaataaatcctggGCGTATTCTGTAAACTGTAATTGGTTGAGTGAGAACAACTGtacaagaaaaaaggaaaattaaaaacatgctcgGGGCTGGATCTCCTCCCCTACCCCCAGGTGTATCCCGAGGGTTTGGGCTCAGAAATGAACCGCCATGTGGCATGAATGTGTCGGGTGTCCCGGTGTGGAATCGATCACGTCTCCTGTCTGATCGGGGGCATCTTTTAAATGTGGAGTGGTATTGTTTTTCCAATAGATTTAAGACTTGTAGACACATTTCAAGAGTAGGTTGCCCGTATTTCTGTCATGCGAAATCGCAGGCGGAGTGTTAGAGGATGCGAGAAGATGGGAGATTAATTGTTTATCTCTCAGGTGCACCCATTGTACCGGCTCTTTGCCATCAATATATTGCCTTTCTGACGCCATCTTCCAAAAGGTGCAAGATTCCCATGACAGTGGCCTAAATGTTACACAGACAGTAACCCTTACAGCATTACTCTGTCTCAGagtggaagagaaaaaataaaataatgattttcagATTCATGCCACTCCATGAGGAACAGAAAATCCTCTCCGGCCTCAAATGTTAcagaaaaacaccaaacaaagcaaaacaggcTTTGAAATTAGCAGTGACCTTTGCTTCCAATGCCGTTGACGATCCAGACAACCGGTTTTTATGTCTGACAGGAACAGACGAGTGGAGCTGCCCGCCTCGTCAACGCCAGGCTAATGCAGTTAGTGTTCTCAAAACCTTCAAGTCCTCTGAAGGCCTGTCATGCAGGCTGTTGCACGCATCGCCAATGGGTTCAGCTCCCAGCTGCATGTTTAGGTATTCAAGGCTCGTCcacaaaagatacaaaaaaggAGGTCTGAGCGGTGCTGAACCACGGGCCTGGCTTCACGTGTCACAATGGTCCGCCGTGTGGGTAGTGcaacaagaaaataagaaagagcGAGACTTATCCCCGGTGTCAGTGCCTGTTCACTGCTAATTTCCACACCAGAAAGCAGACCAAAGCTGGACAAGGTCATGCAGAACAGTTACATTTAACTTTCACTGAAGGCTTTGCCAACAATCAATCACTTTGAATAGCGGTACAATATTGACAAGAGCCTCGATCAGTGAGCTTCATCAGCAGGACACCCTCTCCAAGGACCCCCATCctccaaaaaaactaaaaaaactaaaaaaaaacaactaagtTATGGattgatgtataaataaatgctggTGTGTTTTTCCATTCACATTGGGTGATGTAAACCCCTCATTTTCAGGAGAAGTCCCAAAATTCAGGCAACACCAAGGATACAAGCCAGGGGCGTTTAATTCAGCCCTGCAGGGGGTCACTCTGAGTGGGCATACAATTCACAGGGCCTGCAAATCACTGTCCACTCGCATTACAGATTAGAATTTTGTGCGGTTTTCCTCTGACAGTAATGTGACCATAATTAACAGCCGACTTGCAATACAAAACACTCAATTATTGAATAAGTCAATTGGCTTTATTCTGCATTCAAATTGCAGCCGTGCGCAGCTTGCGTGCGCTTTTCAGAACCGCAGAACTCCGGACAAGCAGACCAATCACAGCCTGAGCTGTTCAGAAACACACGGCACATGTACAAATTGACAAAAGATGACGTGTTCACGAAAGCGTACTGTGACAGCAAAGGAAAATGCATTATTGGCAAGATTAATACATACACTTTATATCTATTCTACAGTGCAAGAAATAAAGAGCAACGAATAAAACCAAAGAGTTATTTTTCAACATGGTTTAGCGTTCACCGTcatattgtgtgttgtgtgtgtattggtaCAATGAATGTAGCTGGACCCACTATATGATCAATCAGGTGTAATTCCTCATAAAAACAGGAGAAAAGCAGTGATTAAAGAGCTGTATTTGAACAAGGTATCGCACGTACTGACAGAATCATGAGaaattgtgtgtgcgtgtgtttgtgtgctgtatgTAAACAAAAGCTTTCATATGTACCTTCACAGTATGTGTACCCAGTATCCCTGTGCCAGTTTTGTTGCTTATCCTCCCTTTTCAAGCTAAACGACTGTTACACAGCATTATGCACGGGCAAAACCTGCCGTTTGCGTGTTCTCTTGCACTTGCTGTTACATGCCTTTGCTGTCCACACACTTTCCATCACAGCTGGCAGAGAAAACCACACAGGAGCACGCAGCCCGTCGCCAAAGCGGCCGTTTGGAATTTGCATACATCAAACCGAATTAAAAAtcaatgctgtttatttattgattgactgattgataaCGAATTGTATGGGTTATGCATCAGGATTTCCGTAAGGAGACTCGGAAGTGACACCCCTGACTGGccttacacaaacacacatagaaggaggggggaataaataaaacaaacctcgCGTCGAGATTAAGAAATAAGTATATGCTTTTATGCTGATATTTCACTATCCTACTCAAGTTTTTCTATCACACAGGCGTTTAATTCCGATTACAGCCCCCCAATAAGGTTGCGTTCTTCCCTCGTGACAGTGTGGGTCGCTACATTCTTGACCTGTCCATCTCTTGCCTTCAACAAAagataaaaccttaaaaaaatcaCCCCTCTGCCAGTACAGTAATAACATGGGAAACACGGTACAGTTCGGTGAGGCAGAACATCAATCAGCTGGGACAGATGGGTGTTGAAGATGTGTGAAGGGGGAAGACCGGGGTGATAGAACAGGGGGGTGACAGGGTTACAGCATTAACAACaaacctacacacacactacctaCTGGTTAAAACAATAGCCAGAGTGCTTCAAAAAGTATCAATAATCAAGTAAGGCCAGGGGAACATTCCAGACCAGTCCTCTCGCGTCGCCCCCCCACCACAACGAGGGTCTCTCGAGTCCTGGGGCATAAAGTCATACAGTCGACAGGTACAGTCTGCGTCCGTCTGTGATCGTTGAGATATGGAGCCATTGTGAGCCGTtccttcatttgtttgtttattttgtcgtTTGTATCTTTAACCTGTAGGTACTTAGAATAGATGTTACAATGATATGGGCAGAATTAGCATCCGactgttttacaataaatagtattaaaaaaaaaattaaaaaaatcaaacctgaaacagccaaaaaaaaaaaaaaaaaaaaatactttttataccAACATACTACTTAACCGGTTAGCATAGCATAAGATCTGTATTACTCATTATTAGTGATAAGCAGTGTTGTGAGATTGTGTATCTGAAGGACGTGTTCACTCGTGGTGGACTTCTGTCACATTGTTCTGGAAATTAGTGAAGATGGATCGATTCAAGTCTGTGTCCGCTGCGGCATTGCGAGGTAGACCAGTCCGACCGCAGGCTGGACTCGGGATAGGTCGCCTAGGCCGAAACGCTAAAGTGCAGCTTGGACAGGATGGGATCTGCCGCCCGCCGCGAGAAATCGAACGGCATGATGGGAGTCCCCTTCTGTTAACTCTACCGCTCCGTCACCGCAGCTCCACCGGCCGGGCAGCGCggaatttaaaaacagcaaaaataaaaaaaacatgcttaaataaaataaaatcgaaTATGAattcaagtttcttttttttccacccatCTTTTTTCGTTCTTTTTCAGCAGGGACAGGTTCGGTCTGTTTTCAGCGATTCGGGGGAACGGATGCCTTCGCCACGCGACGTTTAGAGACGGTGTCCGGCGTTtccaatttagtttttgttccgTCTCTTCTGGTACTTGTGAGCGGATGCTTGCGTGTCTGAAATGCTCGAGGCGGGCTCTTCGCGCTCCCCCGCGTACCAGCAGACGCACTCCTACCGTAAATTAATACCGTGCTGCCGTTCGTCAAGTTTCTCCGAATTCTAGTGGTAATGAGGCTCAGGCAACCTGGGTTTTTCCAATCTCAAGTTTTCTCGTAAAGGACCAGTGGTTGGTACTCGGAATATACACGCGTTTGAGTTGTACAGTACGACGCAGGGCTACAGAGGCAAACTGCAGATCCGGGAAATGtccttttaaaaatagcattagTGCAACAGGAGAGGAATGACCATATTTTGTAGATGGAATAGACGCGATGATCGgggcctgttttgtttttttatatatatgtttgtttttaaacatattccCCGATTTCAAGTTCTGGTGATTAACGCTACTTGTGACGCCACATTCCGCCGCTAACCGCATGAAGCCGCGATACCTAAACATGCGCGAAACGTACTTCCATGCGAGTACCAGGGCAGAAATCTTCACAGACGAAAGGGACGTCACAGAATCGATGCTTCCAGGAATGCGGCCACGTTTTAATAGTCTGTACTTTGTCATGCTTTGCATCGACAAAAAACCCCGCAATGAACTCTTGGACGTTTTTCTGTGTCACCTTAAAAATTACAATAAGGGGCCGGGGGACACTCGAGAAATGGGGGTTTACCGTTCGAAAATTAAACTAGCACACACCCCTGGGACccgaattaaaaagaaaagaaggctAATGCTTTTTTTCAAGTGGCAACAACTGCTGTACACCTCAAACCTCTCGTTAACGTCtaggtattttttatttccccattgttttttttagtttttttaacagaaCCGTAGGTGTGATTGTAATATACTTACATGGCACTTGGGTCATAAACGACCCTCACATCAGCCTATGAGATACCACAGCGAGACTGGCACTGGTACCCCCAAAATTAGAACAATTCAAGTACAGCTCTGGACATGGAATGATCGTGGTAGAAGGTTATTGGTATCAGGTGGGTGGAAATGAATTGGGCTCTCAGTGCAATGTAAGTAAATTCATTCAACCGCAGGAACGAAACAGAATACCTTTGTGATCGAGGAGAAAACGTCATCGAACTCTAGCTGTGCCCCCTTGGGCATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26775 lncRNA downstream 14794 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 78960 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 82767 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 96800 4942071 ~ 4945720 (-) True G21414
TU26762 lncRNA downstream 98669 4942071 ~ 4943851 (-) False G21414
TU26825 lncRNA upstream 82808 5132328 ~ 5132542 (-) True G21462
TU26919 lncRNA upstream 445829 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 465466 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 467707 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 472095 5521615 ~ 5523677 (-) True G21536
AMCG00007129 mRNA downstream 83850 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007131 mRNA downstream 110898 4925129 ~ 4931622 (-) True AMCG00007131
AMCG00007133 mRNA downstream 121910 4918537 ~ 4920610 (-) True AMCG00007133
AMCG00007132 mRNA downstream 124027 4895642 ~ 4918493 (-) True AMCG00007132
AMCG00007130 mRNA downstream 149224 4884584 ~ 4893296 (-) True AMCG00007130
AMCG00007137 mRNA upstream 63742 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007136 mRNA upstream 99683 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007138 mRNA upstream 117375 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007140 mRNA upstream 252531 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007139 mRNA upstream 258895 5308415 ~ 5319239 (-) True AMCG00007139
TU26061 other downstream 2871950 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2896705 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 4089458 952236 ~ 953062 (-) True G20630
TU25699 other downstream 4194231 845929 ~ 848289 (-) False G20609
TU26789 other upstream 7267 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 767289 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 958120 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2449927 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 3343676 8393196 ~ 8396224 (-) True G22200

Expression Profile