RNA id: TU26919


Basic Information

Item Value
RNA id TU26919
length 387
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G21522
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5495349 ~ 5495735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTAGTCAggcaggagctgcaggagaaTAAATAAGCATACCTGTTTGGAGCTGCAGTTCTCCGCAAACATTGACTTTAACCTGTGatgttcttcttttctttttcttcatttaataaatttgtttttattaaaaataacataattctGTCATAAGGTATTGTCTCCTACCCCTAAGCAGCTGTGCCAAACTTCAAGCCTCAGGATCCATGGGAAtgtctgctttttaattaaaacctctcaatttattttgttttaattacatttacagtaatttaaagTAATCAGCCTGGGatgcaataattatatttctaaagtTATATCAAAGGTTTCCAGCAATTCCTTCATACATGTGGTGCTTCAGCATTTATAGTATATAATAGTGAAT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26825 lncRNA downstream 362807 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 467623 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 531789 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 535596 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 549629 4942071 ~ 4945720 (-) True G21414
TU26941 lncRNA upstream 19251 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 21492 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 25880 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 63859 5559594 ~ 5562208 (-) True G21550
TU27012 lncRNA upstream 225528 5721263 ~ 5721542 (-) True G21582
AMCG00007153 mRNA downstream 1545 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007149 mRNA downstream 9522 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007145 mRNA downstream 47979 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007139 mRNA downstream 176110 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007140 mRNA downstream 191218 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007151 mRNA upstream 1213 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007152 mRNA upstream 31247 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007150 mRNA upstream 85049 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 97139 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007158 mRNA upstream 118013 5613748 ~ 5628372 (-) True AMCG00007158
TU26789 other downstream 437943 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 445829 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 446510 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3324779 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3349534 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 321074 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 511905 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2003712 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2897461 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4691579 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile