RNA id: TU26960


Basic Information

Item Value
RNA id TU26960
length 2549
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G21550
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5559594 ~ 5562208 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttctttaaaatgaaaatttaTTGTGTGCCTGAAAGAATGGAGATCAACTTGGTTTAAAGATTTAAACATagagcatatttattttttccccaacatagaaaaacaaaacagaatcattttagaaaaaacaGTGATACTGAAGAAAATGTCAAATCAAACGAGAATCTTGAAAGGCAATTCCACGGAGTTCAGCCCAGTCCTCCATCGCACTCCTTTTACAAAATTCATTTCCAATCAAATGACTCAATGcgtcaaattaaaatgttacctGCCCCCGTACCAGAGTTCTGATGAGAAGTAGCCAGCAGCAGATTATGTGCAAACAACTGAATCCATCACTGAAACTGTCATTTatgctttgaaataataaaaaaatacatttatttattcccacTTGGCTAAACTGCATGAAACGTTTCCCACAGGTTCCACAACAGAAGTGTCCCTCCTACACCTTCGATCTTTACACAGCAGAACTGCTGTCTGTAGGTACATCCATTTCTATTTACAAAGTGAGATGAGCAACGCTTTTTGGAAACTGAAAAAGCACAATATACAGCGATCAGTTCATGCCTGCCTCTTAAACCCCCCCCATGTGCTGAGAATTCAcagatttaaacacacacattttgaaaggcaaaaaaaaaaaaaaaaaaatagcaactTCCATGTTCTCTAATAATATGCATAGCCTTCAGAAAAAACTTAGAACTGAAAGGGCCATTTTAAATCCCAGAACTAagcaattaattgattaattaattaattggttaattacaAATGCTAATTTGTCAATGTTTTGCTGTATACTTGAGAGAGAAACAATTTTGGCAATGACTTTTTGCTTTAAGGTATCCGAGCTTCCTTTCGTAACGAGGGAACTAGGTGCCGAAGCACAGAAATGGATCATATCAAGTTAGAGGCTTCTGAACCGCTGTTCTGGCTGGAGGCCATGATCCACTGCATTAATACCAACTGGTCTGTTAAAATAAACTCTAAAGGacatttgtcttttaaagaTTCTTATACTACACACACTCTTCTTTCACGGGTTTTGCAACTCTTGACGGCGCCCAACTTTGCGCTCTTACTggcatctgtaaaaaaaaaaaaaaaaaaagacgataCTCCTGTAGGTTTAGCTGCACAACCTTTTCCATTTTGATGTCAAGTTGCTTTTTCTTTGAAAGACAGACCCCTCTGGTTAAAACAGGCAAACGTTTTCAATATccttttcaaaaacacacacacacacacaacccaatCATGCTCAATGCCTAGCTTGAGCTCAAATAATCTTAAATACAGAAACGCACTTCGTTTTCCCTGAATTCCACAGATCCTCTTTTAGGGACCAACGGCACGGTTTCAATGATTCTTCAACCACTTCACCACCCAGCAGACAGGAAAAACAGAGCGAGATACGACATCGGTGACAAGGGCTTCTAACAGAGCAGAGTGACTTCACTGTAACGGCTCGTATGTGCTCCTCCTGGGTACGTCTCTACTGGGCTGGGTCAGGGCAGTCTCTGGGTCTGGTGTCACATGGTGCCAGGAGCCACAGCTGAGCTACCCCTACACACCGAGAGACTGTTCATTATAATGTTTTGTCTGTTGTGCTTTTTGCTCATTGCCCAGTGCTATGTAAAGAAAGAAATTCACTTCCTTCCTGTCAATCACAGCACCTGTTACCTGAAAAGCTGAACTACTCAAGATAACGTCGCTCTGGACTGtagactttaaaacaaatgcaacaggGCGAGGGGCTAAAACTGGTTATACAACACTGAGCTGAGATATGCTTAAGGGTTAAACTGGTTCTGCACTATTTGTAAGATGGAAAAAGGGACTCATCTCTTAAATGCACGGTTAAAGTTCTGTGCTGAATTGCTACAATAAACTCCTATATCTATGTATCCAAACAAATGCAGTGCAGGAAGAGTCATCTAACAGCTGTGCTTTAAAGCATAGTTCTTGGAGGCAAATGGTCAACAGCTATAGAGCAGAATCTGTCCCAACTGCATGTGAATATCAACCTCTGGAACAGACTCTGCCAGAGGAATCGCACTGGACTCTGTGAGGCTTTGTGTCCAGTTGGCTCTGTTGTCTATTTACAATGGAAGAGGCCAATTATTATTCCCACAGTGGAAAACATTTGGTTCCAGAGTTCTctgtcacagaaaataaatataaaaaacctTCTACAACAGGCCCTGGCTTGTAACACAGAGgactctgagagagagaggtgagtcAGAGGCATCtagagaaataaatcaataaaaaccaAAGGACAGAACAGAGGCAGGCGGGACTCAATtcaaaggaggagaaaaaacacacttaaaaaaaacaaacaaaaaaaacaaaacaacagctggAAGTTCGAAAGCCCTGTTCCCCGGTTCCCACGGTACAAAAGTGCATCAGATATGGCGAGGGCAGCGTCCGCTGGGCGCCGGGATGTTCAGGCCGCCGCGCTGGCCGTCGTCGTAGTCGTCCGTGTCCGAGGAGCGCTCCTCATCGTTGCATGGCGCGGTGGAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26942 lncRNA downstream 35917 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 40843 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 43623 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 63859 5495349 ~ 5495735 (-) True G21522
TU26825 lncRNA downstream 427052 5132328 ~ 5132542 (-) True G21462
TU27012 lncRNA upstream 159055 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 352864 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 778571 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 956915 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 1004009 6566217 ~ 6569739 (-) False G21756
AMCG00007152 mRNA downstream 7283 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007151 mRNA downstream 57797 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007153 mRNA downstream 65790 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007149 mRNA downstream 73767 5471104 ~ 5485827 (-) True AMCG00007149
AMCG00007145 mRNA downstream 112224 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007150 mRNA upstream 18576 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 30666 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007158 mRNA upstream 51540 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007157 mRNA upstream 111969 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007162 mRNA upstream 129934 5692142 ~ 5693305 (-) True AMCG00007162
TU26789 other downstream 502188 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 510074 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 510755 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3389024 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3413779 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 254601 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 445432 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1937239 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2830988 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4625106 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile