RNA id: TU27012


Basic Information

Item Value
RNA id TU27012
length 280
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G21582
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5721263 ~ 5721542 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cataagaacataagacagtgtccaatcgagaggagcccattcgccccatcgtgctcgtttggtgtccattaataactaagtgatcaaggatcctatccagtctgtttttgaatgttcccacattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26960 lncRNA downstream 159055 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 197586 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 202512 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 205292 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 225528 5495349 ~ 5495735 (-) True G21522
TU27114 lncRNA upstream 193530 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 619237 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 797581 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 844675 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 844675 6566217 ~ 6569739 (-) True G21756
AMCG00007162 mRNA downstream 27958 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 43694 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 92891 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 115395 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007150 mRNA downstream 133034 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007163 mRNA upstream 13132 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007167 mRNA upstream 105083 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 137309 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 151234 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 286187 6007729 ~ 6054064 (-) True AMCG00007173
TU26789 other downstream 663857 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 671743 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 672424 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3550693 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3575448 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 95267 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 286098 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1777905 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2671654 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4465772 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile