RNA id: TU27087


Basic Information

Item Value
RNA id TU27087
length 1154
RNA type TUCP
GC content 0.52
exon number 5
gene id G21632
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5816809 ~ 5820284 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACCTTAGTCTGGGCAGCACAGGCTCTGGCCAGCAGCGTCTTGCCCGTCCCTGGTGGGCCGTACATCAGGACCCCCTTGGGCGGCTGGATCCCCAGGTTCTCAAACTTCTCCTTGTGGTTCATGGGCAACACAATGGCTTCCACCAGCTGCAAAGACAGGAGGAATGAAATCAGAGGTTCTCACTGCTTTTAAAGATCATTCAGCACAGGAAACACACCTTATATCCCATATCAACAACACTGTCTGGTCATCTCTTTGATCAGGACCACaacaaaactttgacacacccaCTAAATTACAAAGTACAGCCCTGTCATCTAACAGTGACTTCTTGCACTTATTCAAAGTGTTACTCCTGACCTCCTGGATCTGCTTGTCCAGACCCCCGATGTCACTGTACTGCTCGGTGGGGCGCTCATCCACCTCCATGGCCTTCACCCGGGAATCGTACTCCGTGGGCAGAGTCTCCAGGATGAGGTACGAGTCCTTGTTCACCCCCTGGGAGGACGACAACAACACAGCTGGCACCTCACAACAGCAGAGTCCTCGatacaaccacaacaaaaagagcagcacagagcacagccgAGGAGCACAATATCTTAAAAAGCATCTCGGTGGAGGCTCGAAATGCGCCCTGCTGAACAGACTGCTAATTAACCGCCGTTGTTACAATCTGCCGAGTAAGGCGCCGCGACGATGGAAGCAGGAAAGAATAAAAGCATCTGACACACAAGATTGAAACAGATCCATGCGCACTCACCACGAGGTCTCCTGGTTTCAGCTTCTCGGCATCGACCAATCCGATGACAGGGAGGAAGTATGTCTGCCGTGTGGATGTTTTAATCACGGCACATTTGCCTTTCCTCTGGGAGTCCAGATCAATGTTGGCTCCGTCTTCTTCCTGATCATTTGGGTCCACGTCCAGCAGCTCAATGACGTTGGAGACGAGGTACGGCAGGGTCTTGTTCACTTTGATCTTCTCCGTGTTCTCTTTGATCTTATCCTTCATAGCCTGGAGTTCGTGGGTGACCCTCAAGACCTCACTTTTCATGATCTTAATCTCACTGTCCAAGAGGCGCGTCCTCTGGATAATCTCCTCGGTGGACATCTTGAGCACTTCCTCCCCGATCCCATCCTCCACCTCGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 95267 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 254601 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 293132 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 298058 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 300838 5514986 ~ 5515971 (-) True G21535
TU27114 lncRNA upstream 94788 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 520495 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 698839 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 745933 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 745933 6566217 ~ 6569739 (-) True G21756
AMCG00007163 mRNA downstream 63838 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 123504 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007157 mRNA downstream 139240 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 188437 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 210941 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007167 mRNA upstream 6341 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 38567 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 52492 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 187445 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 261251 6081535 ~ 6088041 (-) True AMCG00007172
TU26789 other downstream 759403 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 767289 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 767970 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3646239 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3670994 2144716 ~ 2145815 (-) False AMCG00007059
TU27173 other upstream 187356 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1679163 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2572912 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4367030 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7531233 13351517 ~ 13352073 (-) True G22838

Expression Profile