RNA id: TU27114


Basic Information

Item Value
RNA id TU27114
length 221
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G21646
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5915072 ~ 5988322 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGACTCACCCACGATCTGAATGTTAATGGCTGCCTTGTCCTCCATGTTCTCGATCTGCACCTGCACCTCGTACTTCCCGGAGTCTTTGCGCTCGGCGCGACGGATGAAGAAGATGGTGTCGGTGTCGCTGTTCCTCACGCTCACCTGCTTGGGGTCCAGAGGCTCGCCGTCTTTCGTCCAGGTGACTTTGGGTCTTGGTTTGCCCTGCCCTGGAGAGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27012 lncRNA downstream 193530 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 352864 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 391395 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 396321 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 399101 5514986 ~ 5515971 (-) True G21535
TU27225 lncRNA upstream 352457 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 530801 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 577895 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA upstream 577895 6566217 ~ 6569739 (-) True G21756
TU27299 lncRNA upstream 647261 6635583 ~ 6638309 (-) True G21786
AMCG00007170 mRNA downstream 18487 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007168 mRNA downstream 55805 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007167 mRNA downstream 73205 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007163 mRNA downstream 162101 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007162 mRNA downstream 221767 5692142 ~ 5693305 (-) True AMCG00007162
AMCG00007173 mRNA upstream 19407 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007172 mRNA upstream 93213 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007176 mRNA upstream 133380 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007177 mRNA upstream 368688 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007185 mRNA upstream 667091 6655413 ~ 6660262 (-) True AMCG00007185
TU27087 other downstream 94788 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 857666 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 865552 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 866233 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3744502 2167310 ~ 2170570 (-) False AMCG00007059
TU27173 other upstream 19318 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1511125 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2404874 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4198992 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 7363195 13351517 ~ 13352073 (-) True G22838

Expression Profile