RNA id: TU27264


Basic Information

Item Value
RNA id TU27264
length 3440
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G21756
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6566217 ~ 6569739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTTgggataatttattttgtgtagttcattcaaataaacactattttgattctctatttttttccctctttacACCCACAGCTATGTTATACAAAAACgacaaacaaaaagaacaaacggaaggaaaaacaaaacaatcacacGATGTCCTTAAATAACACAGAATCTAAACTAACAGTTTATTAAACGTTAAGAGTTTGGTCTCGTTACTCGAAAGAAGCACAATGCCGTCAAAAAGAGTACAAATCATGTGAAAATCATCTATGAAACCATTTATCAAAAAACAGAGAATATCAAAAGTGTGACGTTGTGCTACAAAAATATTGTGCCACGGACCCCCGGACCTGAGGGGAGCCCACAGGGGATTAGAGAACCGCCGCCCCACTTTTCGGACATGATGTTACACAGCCGTGACTCCGACGCCCCAGACCTCAGTGTGTTCCCGTCGGCGCCCTGGGCCCGGTCCCGCTGCCGGGGTGTAGCGTGTTTACTGCGGGTGTGTTGGGGGGCTCTAGTGTTGTAAACTCAGTCGGACCGGCACTGTGCAGTGATGGCAGCTTCAGCGTGTTGCTCCCCGATTCGACTGCAGGAAGTGCGAGTTGAGTGGGACTGAGCGTGCACAAGTACGGCCTGAAAGACCCtgaattgaatccttaattgaaccttcaattttattaaatttcCTAAATCGGAgccttttaaatgattttaaacagtagggagtttaagttaagtatataaagaaccaactctttttccacaatataaaaagtcaaatctaatcTAAGCAGCTGGAACAagaaccagcagggtaggggctcctccaggactcgagtttgggaacccctggtttaGGGCAGACTGGGGCAAAAGCAATCCGTCTCTCCAATGCCATTTCACTTGCTTTCCCACttgcagatgaaaaaaataataaatcaacgTCTGCCCCATTGCAGGGCCTTCAGAACTGCTCCAAGAGCACGGTCAGCAGCAAACCACCGTCGCGAGAGGAGCACCACAGCTGCTCGGCTGTAAAGTCTGTAACTCAAACGTCCTAGCAATTAAGAGACCAACTGACCCAGATCTGAGGACTGCCGTTCTCCACGGGACAAACGAAGCCAGCAAACGGATCCGAGTCCGGGTGCAGACGGGCTCTCGGGAGACGCACACTGCGGACGCGGACGCAGGATTTTCAGAAGATGTCcggtataaatgtatataaaaaggtACATCCGTCCAGAGTGACGCAACACAAACTGCTATTTGAGCTTTCCTAGCGAACAAAAACCCAAATACACTGGGAGCGAAGCCCCGAGGGCGTGAACGCAAATGGCTGTTTCCCAAGTAAATTATTCAGAACAAGTGCTGCAATTCTGCAAGTTAAACCACTGCGTTAGTGCCGAGGAGAAGCCCAGCGAAGACCAGAACCGTTCCCTAAAGAGACGGCGGTTGGCGTTGGTGTCGAGACGCTTCTCCAGGTAGATAAGGTTTCAGTTCTCGATGCCAGCGTTCCCCTCAAATCGAGATGTTCACACAAAGCACAAATTAAGTGCCACTAAGTCACCCTGTTCGTTTCAGAACTTTAAAACCCGATCCACCCACCGGAGACTGGTCAGACCTGGCTCGAGCTGGATCCTAGCAACCTGGATTCGTCAAACCGTCCATCTCTGAGCTGCACAACAATTCAGAGTTAAAGCCGGGCGCGAGCTCAGACAGCGCTCCGATAGAGACGCGGTGCTTTGCAACGGCTCCGTTAAATCGCTGGCTTTTTACCACTGAAGTCAACAGCTTTCTacaccaggggttttcaaaccggtcaattaaggattcaattaaacaattaaggcctagtttgaaacaaaaatcagcagggcagggggtactccaggaccggcttgaaaaccactgttctaCGCCAATCTGCTCAACAAAGACAGCCCCCGAGCATCTCTCAGCGCTTCACCATTTGTACCCTGTCACTGAGTGGCAGATCAAGGTACACAATTAAAAGAAGTTAAAAATCACAGTAGGATTGAACAGACCACGCCCCAAAGAGCTACAGGGACGAAAGCCAAGGGCAGAGGAATGGCGTGAGATGCAAAGCGTATCCAGGAGGGTAACCCTGCTCAGGCTGTCACAGAGAAGTGAGCGCCAACCGATCGAttagagaacaaaaaaaaaaaaaaatctcaaattaaaagTCAGATTCGCGAGAAGTTTCTGCGATTCCTTCCCAGTGAAGGATGTGCATTTGTGATGCAATTTACACCCATTTTTTCGGATCAGAGTTCACGTacagatttcagttttgttttcacacaacCGGCTGTTGGAGCAGACGGACGTCCGCGAGAAGAAGCCTTGTGGCGTTCGCTCTACCAACACGCCTCTTTCAGTGCATCGTAAATCGCACATAAACAGCCCGCTGAgcagacaggacaggacaggtaCAGTGAAGTATAAACAGTGCACGTGTGTGTCTTCAGAAGAGATTAAATAATCAAAGGAAGGCTGACTGCGCACCAGAAAGCCCACGGCTAAAAACATCGACAggaaattcatttaaaaatgcgATTAACATTCACTGTGATCCCGGTTACTCACCGCCTCGACCCCGAAACTATTTACAAGTGTTTGCGTTTCATTTTACAATCTTAAAGGTCAGAGACCCTCTGGGATCAGCTCAACCTTTAACCACTCTACGGCCATCTGTCCTCCCCTCCTGCCCTGAACATGCGGGCGTATCCGGCAGAAACGGACATCCCCCATCAGAGTCCCCGGGAGCACAGAGAGCCGAGGACAGACAGTCCCGTTATACATCCGTAATGCTTCACATACATCGTTACTGAGGACTATTTTACAAAGGGCTGTTTCGTTTAGTTTCTGTTGGAGAAACAGAGAAGTTTGCACAATTTCACCAAGAGATTATACAAGTGAGAGGAGAtgggaaggaagagagagagacacagagagagcgTTTTGCACAGAAAGTTTGGCATGGTGCTAATgatgaactttttttttgtttatagtttGTAAGGTTTCATCATCACTTCCCTGGATGGAGAGACCCACCAGCTCACTCCCTCAACCTCTCCAATCTGAAGAGGAAGAATGAGCTTCTTGGATTACTCCCCACCCGGCCCACTCACACAAGCACCACTAGCGCTGTGCCAAAGCGTTAGATCAGCCAGGTccacagaaagagaaaaggagaggaagaggatgaAGAGAAATAAGACGGACAGAAAAcctccccccccgccccgctGCGCTACTGCGGGAAGCTGTTCTGCTGCCGGCGTTTGGCGGATCTCATCTTCTCGAAGCGGGACTCCATCTCCTCCAGGACCTTGGGCGTGTAGCGCACCACCAGCTTCACCGTGCCCTGCGCCGCCTTCAGCAGCTCCACCGCCTTCTCGTGGTGCTCGCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27243 lncRNA downstream 46481 6519123 ~ 6519736 (-) True G21739
TU27225 lncRNA downstream 225046 6340779 ~ 6341171 (-) True G21722
TU27114 lncRNA downstream 577895 5915072 ~ 5988322 (-) True G21646
TU27012 lncRNA downstream 844675 5721263 ~ 5721542 (-) True G21582
TU26960 lncRNA downstream 1004009 5559594 ~ 5562208 (-) True G21550
TU27299 lncRNA upstream 65844 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA upstream 65844 6635583 ~ 6638059 (-) False G21786
TU27301 lncRNA upstream 69258 6638997 ~ 6644878 (-) True G21787
TU27322 lncRNA upstream 117745 6687484 ~ 6689109 (-) True G21803
TU27327 lncRNA upstream 134670 6704409 ~ 6704662 (-) True G21807
AMCG00007177 mRNA downstream 193819 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007176 mRNA downstream 443841 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007172 mRNA downstream 478176 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007173 mRNA downstream 512153 6007729 ~ 6054064 (-) True AMCG00007173
AMCG00007170 mRNA downstream 669632 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007185 mRNA upstream 85674 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007184 mRNA upstream 105927 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007188 mRNA upstream 119841 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 171958 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007190 mRNA upstream 194485 6764224 ~ 6778550 (-) True AMCG00007190
TU27173 other downstream 552048 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 745933 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1508811 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1516697 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1517378 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 929708 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1823457 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3617575 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6781778 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7375904 13945643 ~ 13946065 (-) True G22931

Expression Profile