RNA id: TU27322


Basic Information

Item Value
RNA id TU27322
length 1626
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G21803
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6687484 ~ 6689109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agacgaagaaaaagaagaaagagcaGGGGGTTGGGGGTCTCATTGCCCTTGCAGTCCAGGTCGCTGGAGTTTCCTCCTGCAGATAATCGTATAGGAGACTTGTGGTCCCATCGgatgtgtctttttaaaacatgacGTAACATTCAGGAAACATATTTATCTTTTTGATTGAAAATCCAAACACGTTGCAACTACAGGATCCGGGAAAAGTACTGATGACTTCGTAGCATGGGAAACAGCAGCGAGagaaaacaattgttttctaCAGAGAAAAAGTCATTTGAGAATGACCTTAACCCCTCAAATAATCAGTTACAACAAACTGTAAAGCTTTGTCAGCTTGGATGATTTTCATCAAGTTTGTTAGAGTATTATTTTCTTGCTCGCGCTTATGTAggaatttttatttaatttattttaaacagatgttgTTGGTTTAAGCCTGGAGAAAAGATTGGCTTGAGTGgtcttgatttttgtttttcatgcaaGTATTACTTTACATTGGAGGTTGGTCGTTGAGGAAACAAAGCctgccaattaattaattaattaattaattaatttaaatattcgCTCACAATAACTTTGCCCATTTAAATTACTTCACTGGAAACTAAAATTAAGCCCTTTAAGCCAACTTGTCTTTAGTCTGCCAAGATCTTATCTGCAACAGATGGTGCTATTATCTTGTAAATGTTTGTCCAACAGTGGGGAGAAAATTCCCGTCTAGAACATCCGAGCCTCAAAACCTCTTGTGTCTTTTGCCTTCTATGAAATATGCGGAATTATCCTCCAGTGCCACTTATTTGCCATTGTGTCGTAATGGGAAGTATTCTGTAAAGATTAGAATTTTGTTTTGAGTGTTTAAACACTCGAGTGTGGTAAACAcgtaatattttataaatgagcttataattgtattaatttaatgctgtgagtgtttatatatttaatgaaccaacaaaaaaaagcacaactgtaatattgtgtaatatgtttttgttttgtattcttgtGGTTACTCTTTGTActgctttgtaaaataataataataataattaataataattataataattgtcaACGGGGATGGTTTTGCAATCCAACAATAAAATTAGTGAACTGCAGGCAGGAAAAGGATCCGAATGCTTAAAAAGTGTAAATCCACCAgaacttttttgtcttttttgtaatAAAGATGTTAATGGTGCCAATTGTTTAATTCCCCTAATTAATGGAAGCGTTGGAGTTTGTCAAATACAAACCATTTCTTCTGCTACTATAACTCCTGCTTCTCCGTCTCAAGTACAGGGGAGTGTGGGGGGTATTGCTAATCCCACCATATATATTTCACTTCGGTTAATAACAATATTCAGACTTAACCTCTATACTGGCAAAGTTGAGACCTTTACCGTGGTGAGCTGGTGTTTTCCGAGGCCAGTCTGATCAGTGGCAGGTGGAAAAAGGTTTTAAACGGGAAATTAACTTTGcccaagaaaaatacaaatgttttttccacACTAATGTTCATCTTTGACATGAACATGAAAAGAGAagcaaccccccccctccttccccATCTTGAGCCACATCATcagttaaatacaatataaaacatcccca

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27301 lncRNA downstream 42606 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 49175 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA downstream 49425 6635583 ~ 6638059 (-) False G21786
TU27263 lncRNA downstream 117745 6566217 ~ 6569739 (-) False G21756
TU27264 lncRNA downstream 117745 6566217 ~ 6569739 (-) True G21756
TU27327 lncRNA upstream 15300 6704409 ~ 6704662 (-) True G21807
TU27417 lncRNA upstream 635315 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 1064305 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 1211693 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 1224495 7913604 ~ 7984510 (-) False G22111
AMCG00007184 mRNA downstream 10503 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007185 mRNA downstream 27222 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007177 mRNA downstream 315086 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007176 mRNA downstream 565108 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007172 mRNA downstream 599443 6081535 ~ 6088041 (-) True AMCG00007172
AMCG00007188 mRNA upstream 471 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007189 mRNA upstream 52588 6741697 ~ 6756583 (-) True AMCG00007189
AMCG00007190 mRNA upstream 75115 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007191 mRNA upstream 238491 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007192 mRNA upstream 272621 6961730 ~ 6967694 (-) True AMCG00007192
TU27173 other downstream 673315 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 867200 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1630078 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1637964 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1638645 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 810338 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1704087 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3498205 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6662408 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7256534 13945643 ~ 13946065 (-) True G22931

Expression Profile