RNA id: TU27501


Basic Information

Item Value
RNA id TU27501
length 728
RNA type TUCP
GC content 0.59
exon number 7
gene id G21942
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7499447 ~ 7506875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTAATAGAGTCGCAACACTGACACCGTGCGGCTGTTGAAGGAACTGCGTgtcaaattcaaaatgcaaGAAAAGTTTGCGATGCGGAGCTGCGAGCCGCACAGCGCGGAGCCGGAGTTTGAAAAGCTGCCTCCGCTGAGGGACGGACAGGCAATGGAGCAGCGCGGCTGGGTTAGAGTAATCAAACTGAAGCTTCTCATAAACTGCGGCATAATTatgGTGCTGGGCTCGGTGGTTCTGGTCGTGACCACGTGGACCGCCTGTGAAGAGCGACTGGGCACGCTGCAGAGTGCCGGCCTGCCCGAGTCCAGATACACAGCCCTGCTGCACAGCGTGCAGGCCGTGGGGGGGGCGGTGGGGACTCTCCTGCTGGTGgtgatGATTGTCCTGGGGGTGCTGCTGTGTGGCTTTGTGCAGCTGCTGGTCTGGACTTGGGAAAGCGGCGCAGAGGTGGGGGCAGCAGGTCAGGACCTGTATGACCGTCTGTGTCACGACTTCGCCCTGAATCACTCAGACAGAGCCCAGCGGCATCTGACACTCGTCCATACTGCGTTCTCCTGCTGTGGGAGAGACCTGCCCCCAAGCCAGGAGCCGATCCTGCGAGAGACGACCTGCTCACCGCAGCTCAGAGAGCAGAGACAGGACTGTCTCTTCACCATCGCTCACTCCCTACAGCAGCACCTGGAGATCTGCAGGGTTTTCCTGCTGGTTATTGCGACTTTTATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27417 lncRNA downstream 171705 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 794785 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 810338 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 854569 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 861138 6635583 ~ 6638309 (-) True G21786
TU27647 lncRNA upstream 246539 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 393927 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 406729 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 474473 7981348 ~ 7984510 (-) True G22111
TU27820 lncRNA upstream 745152 8252027 ~ 8252664 (-) True G22191
AMCG00007204 mRNA downstream 31296 7460325 ~ 7468151 (-) True AMCG00007204
AMCG00007207 mRNA downstream 70427 7428719 ~ 7429020 (-) True AMCG00007207
AMCG00007205 mRNA downstream 76245 7408648 ~ 7423202 (-) True AMCG00007205
AMCG00007206 mRNA downstream 102646 7384420 ~ 7396801 (-) True AMCG00007206
AMCG00007201 mRNA downstream 157106 7327508 ~ 7342341 (-) False AMCG00007201
AMCG00007211 mRNA upstream 53835 7560710 ~ 7561451 (-) True AMCG00007211
AMCG00007210 mRNA upstream 66427 7573302 ~ 7580896 (-) True AMCG00007210
AMCG00007214 mRNA upstream 77911 7584786 ~ 7591300 (-) True AMCG00007214
AMCG00007213 mRNA upstream 99708 7606583 ~ 7614412 (-) True AMCG00007213
AMCG00007212 mRNA upstream 108281 7615156 ~ 7630176 (-) True AMCG00007212
TU27173 other downstream 1485278 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 1679163 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2442041 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2449927 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 2450608 5041659 ~ 5048839 (-) True G21426
TU27830 other upstream 886321 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2680439 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5844642 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 6438768 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8814122 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile