RNA id: TU27713


Basic Information

Item Value
RNA id TU27713
length 776
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G22111
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7913604 ~ 7984510 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatttctgtatttattttttattagttttgtaataaatatctgaataataaaaattcatttttttgtgaagttggaaaaaaaaaagatcaaaggatggtatttataaatatatatcatactGCAGaacattaattttttttcaagTGTACAATTTAATACTGTTGTTAACCGAGCATAATAAAAGGACCGTTTTACATAAGGTATACAGCCCAAACAGAACAGTGGAAGAATTCCATTCCTTTGCACATGACATCActttacaggagaaaaaaaaaatcaaatcaaataccaATTTAATATTGCAGTCTCTACTATTTAGAGGTATACTGAAGAAACACCTGGTGGTCTTGAAAGTGAAAATCTATGGAGTTCTAATATTTCTGCCTTTGAATCAATATACGTTTAGTatgacatgttttatatatatatatatatatatatatatatatgtgactCCTATTACGCCTCAGCACACAATTATTAGGCTGTTTACTAAAcaacaatgtaatattttccaTCAGCCTAGAGCCCTGAACCAAAACATTATTAACTTCAGACCGTTACACTTAAAACAGAGCTGTGCTTAATGCGTAATGGACTGCAGTTTTACGAAACAGCGCAGTCTTTGCTCTTACCAAAGAAAGTTCCGATAAAAAACACCCCAAGGGGAACATTAATGACAGGAGAGGTGATGTTAATGAACCAGTTGGGAAGGAAAGGGGTGATCCTCAGGAATATAATGTAGTTAATTAGATGTTCTCTGTGCTTGTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27672 lncRNA downstream 80173 7900802 ~ 7901175 (-) True G22077
TU27647 lncRNA downstream 227651 7753414 ~ 7753697 (-) True G22057
TU27417 lncRNA downstream 653606 7324424 ~ 7327742 (-) True AMCG00007201
TU27327 lncRNA downstream 1276686 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 1292239 6687484 ~ 6689109 (-) True G21803
TU27820 lncRNA upstream 267517 8252027 ~ 8252664 (-) True G22191
TU27822 lncRNA upstream 269383 8253893 ~ 8254667 (-) True G22193
TU27848 lncRNA upstream 455342 8439852 ~ 8443144 (-) True G22217
TU27884 lncRNA upstream 705688 8690198 ~ 8690751 (-) True G22249
TU27939 lncRNA upstream 991607 8976117 ~ 8980074 (-) False G22298
AMCG00007226 mRNA downstream 9773 7947714 ~ 7971575 (-) True AMCG00007226
AMCG00007228 mRNA downstream 34407 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007227 mRNA downstream 47049 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007229 mRNA downstream 53979 7902173 ~ 7927369 (-) True AMCG00007229
AMCG00007221 mRNA downstream 233903 7744536 ~ 7747445 (-) True AMCG00007221
AMCG00007238 mRNA upstream 118978 8103488 ~ 8104939 (-) True AMCG00007238
AMCG00007239 mRNA upstream 196048 8180558 ~ 8183186 (-) True AMCG00007239
AMCG00007240 mRNA upstream 458817 8443327 ~ 8466794 (-) True AMCG00007240
AMCG00007246 mRNA upstream 567587 8552097 ~ 8560440 (-) True AMCG00007246
AMCG00007247 mRNA upstream 618968 8603478 ~ 8617299 (-) True AMCG00007247
TU27501 other downstream 474473 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 1967179 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 2161064 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 2923942 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 2931828 5042520 ~ 5049520 (-) False G21426
TU27830 other upstream 408686 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 2202804 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 5367007 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 5961133 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 8336487 16320997 ~ 16322651 (-) False AMCG00007365

Expression Profile