RNA id: TU27830


Basic Information

Item Value
RNA id TU27830
length 728
RNA type TUCP
GC content 0.40
exon number 2
gene id G22200
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8393196 ~ 8396224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCACACTAGTAAtaaaattgcattacattttcataaaataaatgttccagtttatatatacagaaaaaacagaCTGTACAGACCCTCCCAGGAACAAAACCCAAAAGGGGaaacaaacatcacaaacaTACAGGCAATACAGTGCTCGGCTAAGCAGGCACAACTGTACATCTAAACTTGTAACTGCTCAGTGTTGGGGATGGGGGAGGGGcaaaaaagtattacatttacaatacagtcCTTCGAGACCAATAAGGATTAAAAAGTATTGCAGGCAAGCAGACGGAGGCTCTTCACTTCGAGTGCAACAGAACATCCATCCAGTGTGGCTCAGCAGCCTGGGGCCCCAGCTATTGGACTTGGGTTTCGAAACTCCCATTGAGTTGGCCTTCCTCATAGTCCATCTGACAAAGAATCATGTTGTTCTTTAGGAAAAACTTGTCCCCAACGCAAaCCTCTGGTTACAAAGCTGACAGGCAAAACAGTCCAAATGGTAAACATTATCTCTGGCTCTCATCACCATTTCAAAGGCAGGGATCAATTTACTACAGGCTGCACAGTTCCCTGTAGTACCAAAgagcctgaaaaaaaaaaaaaggaggaaaaaagtTAGGTAGCGACTTGTGCCTTAATAAAATTCCAAgagtttttttaagaaagaaatgtatcttGGCAcacatgattttttttgttaatgaggGTACAAACCTAGATGTTAATTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27822 lncRNA downstream 138529 8253893 ~ 8254667 (-) True G22193
TU27820 lncRNA downstream 140532 8252027 ~ 8252664 (-) True G22191
TU27714 lncRNA downstream 408686 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA downstream 408686 7981348 ~ 7984510 (-) True G22111
TU27672 lncRNA downstream 492021 7900802 ~ 7901175 (-) True G22077
TU27848 lncRNA upstream 43628 8439852 ~ 8443144 (-) True G22217
TU27884 lncRNA upstream 293974 8690198 ~ 8690751 (-) True G22249
TU27939 lncRNA upstream 579893 8976117 ~ 8980074 (-) False G22298
TU27941 lncRNA upstream 579893 8976117 ~ 8980818 (-) True G22298
TU27949 lncRNA upstream 784794 9181018 ~ 9184829 (-) True G22305
AMCG00007239 mRNA downstream 210010 8180558 ~ 8183186 (-) True AMCG00007239
AMCG00007238 mRNA downstream 288257 8103488 ~ 8104939 (-) True AMCG00007238
AMCG00007226 mRNA downstream 421621 7947714 ~ 7971575 (-) True AMCG00007226
AMCG00007228 mRNA downstream 446255 7936262 ~ 7946941 (-) True AMCG00007228
AMCG00007227 mRNA downstream 458897 7928506 ~ 7934299 (-) True AMCG00007227
AMCG00007240 mRNA upstream 47103 8443327 ~ 8466794 (-) True AMCG00007240
AMCG00007246 mRNA upstream 155873 8552097 ~ 8560440 (-) True AMCG00007246
AMCG00007247 mRNA upstream 207254 8603478 ~ 8617299 (-) True AMCG00007247
AMCG00007248 mRNA upstream 224314 8620538 ~ 8626345 (-) True AMCG00007248
AMCG00007249 mRNA upstream 299237 8695461 ~ 8698149 (-) True AMCG00007249
TU27501 other downstream 886321 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 2379027 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 2572912 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 3335790 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 3343676 5042520 ~ 5049520 (-) False G21426
TU28289 other upstream 1791090 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 4955293 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 5549419 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 7924773 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 7924813 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile