RNA id: TU27949


Basic Information

Item Value
RNA id TU27949
length 3132
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G22305
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9181018 ~ 9184829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtACACAGCTAGAGAGATTAACTAACCAAGATCTGTATTAATTGGCAAATCAATTTCAACTGATGGCGAACTGTTTTATCACAACATTGCATAACTAAAACAAGGCTCCCTATGGtagatttgcatttaaaaactgcCAATTCTAAAGTGAGATGCATTCAGACAGAGCTAAGATGTAAACCTACATAAGTCTGGCAGCAGTATTCATTTGCTTTTGTTGAAGACAGTAGTTTGCAGCAGAGTCCtgaattttacatttgcttttaatgctGACAGTACACGATTAGAGGAGGAAATCCAAAACCAAATGTCACAGGTGTTGTGTGAAGGGATATAAAACAGTAAGGGGGATCAAttgaaaaagcacatttttaagaatgaaagcttttaaaattgaaatagcACAGGAAGCCTTACAGAAAAGGAGTCAAGGCCACTTCAATTCCCTCAGGGAGTATGCTGTACCTTGATAgcagaacacaaacagcaacatATTCCCTGAGGTAATTTTGCTTTGGAAGTAGAGCTTTAAACAGTCACTCACAGGGAAAAGCTTAATTAGGAAAGCAAACACTGAATGTTCACGTTCACGTTGAGCTTGCAGTTAAAATGGGCAGCACTTTACCTCACTGAAGCCCAGGCCACAATGTCTCCTATTCCTTCCAGAGAGTTTTCCATCAAGGCCTTGTTGGTATTGATGTTCAAGTTCAGAATTCATCCTCTTATCCTCTTCCCCTGGCTGTCCTGAAATGAGAGGTTGACTTGTGATCTCCAATAACAATACGTCCTGTGTGCTCTTtctgaaatgaatacattcatatttattatagatagatagattgaattgaagcaagaagaacagatcaaaagatggacaaaggaagctattgaatggatcccaagagatgaaaaaagctAGAAGACGACCGCATAAAAGATTGGAaggttaaataataaactttgcagccatgacatggaaaaggggaCCTATAGATCAaactggaaacatcttggggaggccttcatccagcagtggatcgatatagacTGATAGTGATGAGATCGATAGATGTATAGATGCATAgatataaaacaatgcatttggtTATTGTTTCCCCATTATGAAATCTAATATCAGggatttccctttttctttttaagtcttatataaataaatgtggatgACACATAAGTGCTTGACAACCAATCCATGTTATAGTTGGCTAACCCGAAGATAATTTGGCCACTACTGCTTCCGGGAACATTGGAATACAAGAAAAAGTTCTGCAAGATGTTATCCTTTAAACAATGTGGAACAGGGGGCATACACTCCTTTAAAACAGGGCGGCTTCTTGGTACACCTGATACAGTCAGCTCCAAAATCAAACCTCACCCTTCTGCATACCTGATCTGTAGAGTCTTGCCAATAAGACACACCTGGGAAATGTATAGATCCTTAAAAAGGGGAAAACCAGGTTTGACAAAGATCAGCGAACAACGATTTATTGATCAATTTGTTGCAAAACGGGAATCAGGACACAATTAAATCTCCTTGgccaaaaacaaattataaaaaataatgtcttgCAGTTAAAGAACAACAATGAGTACACTTTGTTCTTAGTCCTCTTCcacaatatttaaatcataGACATTTGCAATACCTACAGTAGTTTGAGCTTTTGTGTACACAATGGAAGCAGATGTCCCTGGGCTTCGTGTTAGATCTCACCATTTATTCAGTTTGGGAGCCTTTCAGCAACACCTTTCAAATAACATTAACACTGAATGTAGTCTTAAGGCTGTGCTAACACAACCAAGCAACAATTTCTTGCTGTGTCTGCTGGTGCCGAAATGAAACATTGATGAGCACATTCATTAACACTCACCATCCGTTTAGCCTTCCTTGTTATTCTGCCTCTGTTATAACCATCTTAAAACAGCATTTATCCAAGTGCTTAGTACAGCGGCTTCGGGGTACAGTGCTGAAAGTATGCCAAATGTTTAAGGCCACAGGGAAGAACAAGCTTACCTTTCCTGCCCCCATCAGCCTGAGAAACTTCTGTTTCCGCTCATCAGTACCTAAATCTGCAGCATCCCAGCTACAAGATCCTGCCTGCAACACAGGAGAAGACCACTCAACGCCCAGCTGTAATGCCCTGACCTCTCCATGAATTACAGAGGCAGGAATATACTGCATTTTCTGGCAATGCATAAACAATGAGTTTTGTACATGCAGAGCAAAACTCAGCATTGCAAACCTCAAATACACAGTCCTGCCCCACCAAGGTGCTGTACTGGGGGCTCAGAGGAGGAATTTGACTGGGATCATTTGGAAGAGCAGAGGTGAGTAGTCTGAGCCCAACACCATACATTTTCTATCACTGATAttcaaacaaacacttttttacAATGTGAATTCAGTGCTACTCCCCCCAGCAATTACATCAATAACCACTGCTTtatcatcattaaaacaaagtcaaaaGTGGATCAGAAAGCGAAACAAATAAGCTTTTGACTTCATTATTTGGGGGGTGTCTCGACTTCACAGCCTGCTATTTCTTAAGCAAGGTAAATCACATTCATATAGCAAGCACTAACtagaatgcatttaaaacaatcatctTGTACTTTCTTCACCACACAAGCTCAATGTGGAACTCGCACGGAGTATAATATCAATGCAAGTTAAATAGTGAACCGGATACAGCCGAGACAAGTCAATTCAGTATATGTAGCGAATGAGCCTTTTAGTATTTAGAAAAACAGTCGTCATTGCCATTTTCTATTTCAATGCCAACAGTGCCACTGGACAAAGCCCATGCATGAGCACAAACATCTCAAAGAAATGAAGTAGCGAATCATCCCGTCCGCACACACTGGCAGAGGCCTTGATCTGAGAGGACCAGCACTGCGATCTCCTGTCTGCCCGCATTACATCGACATAAAAACATCTAGTACTTCATTCGGAGACGCGGGTCTTTTTGTCCCATGTTGACGGTCTTCGGCGGAGCTCATTTTGAAGTTATAGccaggttttctgtttttaactgTAAGTACTTTTCCCTTTGCAAACCCGATGGATCTTTAAATGCGCCTGCTGGAGCATTGCTTCATGGGAGTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27941 lncRNA downstream 200200 8976117 ~ 8980818 (-) True G22298
TU27939 lncRNA downstream 200944 8976117 ~ 8980074 (-) False G22298
TU27884 lncRNA downstream 490267 8690198 ~ 8690751 (-) True G22249
TU27848 lncRNA downstream 737874 8439852 ~ 8443144 (-) True G22217
TU27822 lncRNA downstream 926351 8253893 ~ 8254667 (-) True G22193
TU28070 lncRNA upstream 232939 9417768 ~ 9437269 (-) True G22393
TU28077 lncRNA upstream 272963 9457792 ~ 9463337 (-) False AMCG00007267
TU28101 lncRNA upstream 413863 9598692 ~ 9599154 (-) True G22414
TU28102 lncRNA upstream 439737 9624566 ~ 9624878 (-) True G22415
TU28103 lncRNA upstream 448980 9633809 ~ 9640829 (-) True G22416
AMCG00007256 mRNA downstream 82412 9091932 ~ 9098606 (-) True AMCG00007256
AMCG00007255 mRNA downstream 169817 8981570 ~ 9011201 (-) True AMCG00007255
AMCG00007249 mRNA downstream 482869 8695461 ~ 8698149 (-) True AMCG00007249
AMCG00007248 mRNA downstream 554673 8620538 ~ 8626345 (-) True AMCG00007248
AMCG00007247 mRNA downstream 563719 8603478 ~ 8617299 (-) True AMCG00007247
AMCG00007261 mRNA upstream 3782 9188611 ~ 9233981 (-) True AMCG00007261
AMCG00007260 mRNA upstream 133351 9318180 ~ 9318690 (-) True AMCG00007260
AMCG00007258 mRNA upstream 146360 9331189 ~ 9335174 (-) True AMCG00007258
AMCG00007262 mRNA upstream 150898 9335727 ~ 9339155 (-) True AMCG00007262
AMCG00007259 mRNA upstream 165215 9350044 ~ 9383687 (-) True AMCG00007259
TU27830 other downstream 784794 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 1674143 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3166849 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 3360734 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4123612 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 1002485 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 4166688 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4760814 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 7136168 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 7136208 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile