RNA id: TU28037


Basic Information

Item Value
RNA id TU28037
length 2062
RNA type TUCP
GC content 0.47
exon number 7
gene id G22372
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9436524 ~ 9499728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttGTAATGCAACACATCTTTATTGAAACTTTCTCTCAAGCAACATCAATTTACAAACTGAGGAATTTGTGGGAGCGCgactttaaaatgttatggAAAAAATACAGCTTGTAAAACCCTAAACGAATTGTCAACCAaaaagagggggaagaaaaaaaaaaaaaaaaaactcccagaATTTGGACCAGCAGTGgcagaaggtttttttttttttgagtttcattttttacaaaaaaataaattaatgaaaatcttTCAAGTTTACAGGAATAGTTGTCAAACACAGGCTTGCTTAAAATCCTGACGCAAAGATGATTTCAGCTTGGCATGTGTTttgattcattaaaacattaagaattttatttaaatatataatcaaagcAGGCTTATTTACTCTGATCAAATAgccaggaaaaaaagaaaaaaaaaaagttgatacCACTGATgagacaaaacaatgtaaaaggGGCTGGGGCAAAAGCATTCTCAatgttttagtatttagtatggCCTATGTTTCCAGTCCGAAAGCCTTTAGGAACGCATCACTTGAGCATTACCTCGAGAACAACCTCGAGGCCCCTGTCCAGCGCCGCGCTTGTAGTTCTGTTGGTACCCATCCTGAGGACATAAGACAAGAGAAAAGGCTGTCACTTGCATTCTTCAAAAGGGTTTGGATCAGGTTGGTACCATTCCCCATttctaaaactaaaaatcagGTTTCAGGCACTTATTCAGCTGATTGGATCACGTCAATTCCTTTGATAAGATTGTTCTAATCTGCAAAACATGCCAGCacaaaccccccaccccctctccaaAGCCACACAGGTCACCTTCCTAAACCAAAGGGACGAATATTCAGATTAACCATCCAACACCAGCTACAGAAgccaatttaacattttaatgtcaGAATGGAAGTAATGGATTTCCCCCTCCATAGCCTGCAATGCTCTCATTACCCTCTGATAGCTGCTGTTGGAATAGTCCCGAGGGGTGCTGAACTGGGATTGTCCATAGCCGCTGTTTGGAGTGTTGGAGAAAGGAGGGCGGTAACTGTCATATCCACCTGAAGCCGTTGGAGGGTCCCCGATAGCCGTTGAGCATGCCGCGCGAGTTCCTGGGCCCGCCACGAGACATAGCCCTGCTGTTGTAGAAGGATGTGCCCGGTCGGCCAAAACTGCTGCCCTGCTGTGGAGGCTGCTGGGACAGCTGCTGATGTCCCCCTGTTGTGGGGATGGTTTGGTCTTGGGTGTGGAAGGCACCAACGACCAGACTGCAGCTGCTCCTGCTGAAGCTCTGGCTGCTCCACCTGGTGCGGTGTCTGACTGCTGAAGCCCTGGCTGTAGCTGCTCTGGTACTGGTTTGGCTGTTTCAGAGAGTCTGTCTCATTGGCAGGAGGGACAGGGGCATTCAAATTGAACACCTTCACCGTCTGCATGGACTGGAATGGGGCAGCGTTGACGTTTATGCCACTGCTGTGGAGGGGCTTGCTGGGCACGGCCTGGAACACCTGGGGCTGCGACACGGTGGGCAGGGTGGAGGCGGCAGGGGGCTGCTCTGACGATAAAGACATGGAGGCCTTGGATGGGGTCGATAGCTTCTGTCTGAGGCCGGGGGTCTGTGTGTGAAGGCTGATACAGGGGTGGCGTCGTGGGGAAAGCTTCAGGTGTGGGGGAGACCATGGGGACCTGAAAGGGAGAATGGACTGAAATTAGCAGGTACTACATGTGCAAGAGCTATGAATATGGAGCGGATCTACATTCACGAGTATTTCCAATACTTTGGATCATGACAAggttaataaatcaatactaGAATGAACAAAAACTTACTTGTGTGGCTTCTGGTTGTACAGGTACTGTGTTGGGCTGTGTCAGTCTGGATTCAGCGTGAACTGCACAAAAAGGGTCTGGGGGGCAAACCATCTGTGGCATGTCCAGGCTCTGTGAGGGCTTCATAGGCTGTGCAGACACGATCGCAGGGTCTATCGCCTGCCCATCAAACTCAAGCATGGAATCCTAGGAACAGTAACCAAAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28027 lncRNA upstream 40044 9396221 ~ 9396480 (+) True G22364
TU28004 lncRNA upstream 97424 9335718 ~ 9339100 (+) True G22344
TU27922 lncRNA upstream 458328 8976101 ~ 8978196 (+) True G22285
TU27862 lncRNA upstream 832466 8592139 ~ 8604058 (+) True G22230
TU27843 lncRNA upstream 944067 8492161 ~ 8492457 (+) True G22212
TU28104 lncRNA downstream 142869 9642597 ~ 9644747 (+) True G22417
TU28168 lncRNA downstream 437192 9936920 ~ 9941888 (+) False AMCG00007278
TU28246 lncRNA downstream 652761 10152489 ~ 10239865 (+) False G22528
TU28244 lncRNA downstream 739861 10239589 ~ 10241408 (+) True G22528
TU28245 lncRNA downstream 739861 10239589 ~ 10241408 (+) False G22528
AMCG00007264 mRNA upstream 3209 9430419 ~ 9433315 (+) True AMCG00007264
AMCG00007263 mRNA upstream 26436 9396853 ~ 9410088 (+) True AMCG00007263
AMCG00007257 mRNA upstream 250676 9178903 ~ 9185848 (+) True AMCG00007257
AMCG00007254 mRNA upstream 479120 8880884 ~ 8957404 (+) True AMCG00007254
AMCG00007251 mRNA upstream 651790 8777969 ~ 8784734 (+) True AMCG00007251
AMCG00007265 mRNA downstream 22706 9522434 ~ 9526650 (+) True AMCG00007265
AMCG00007270 mRNA downstream 124773 9624501 ~ 9634126 (+) True AMCG00007270
AMCG00007276 mRNA downstream 294006 9793734 ~ 9849791 (+) True AMCG00007276
AMCG00007277 mRNA downstream 422141 9921869 ~ 9925952 (+) True AMCG00007277
AMCG00007275 mRNA downstream 431160 9930888 ~ 9932943 (+) True AMCG00007275
TU27900 other upstream 725213 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 1040282 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 2057578 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 3856230 5565941 ~ 5580294 (+) False AMCG00007148
TU26961 other upstream 3866445 5565941 ~ 5570079 (+) False AMCG00007148
TU28420 other downstream 1111468 10611196 ~ 10613104 (+) True AMCG00007307
TU28829 other downstream 4978945 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 5786769 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 8699040 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 8707350 18207078 ~ 18208308 (+) True G23698

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066030 True 2706 mRNA 0.48 18 NC_007118.7 26998210 ~ 27018492 (+)
grasscarp (Ctenopharyngodon idella) TU146805 True 2202 lncRNA 0.50 15 CI01000026 2929054 ~ 2936303 (-)
rainbow trout (Oncorhynchus mykiss) TU66121 True 623 lncRNA 0.33 2 NC_048565.1 54504700 ~ 54505437 (+)
eurasian perch (Perca fluviatilis) TU146805 True 354 lncRNA 0.53 2 NC_053121.1 33465088 ~ 33494501 (-)
eurasian perch (Perca fluviatilis) TU66121 True 619 lncRNA 0.37 1 NC_053116.1 13432599 ~ 13433217 (+)