RNA id: TU28102


Basic Information

Item Value
RNA id TU28102
length 313
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G22415
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9624566 ~ 9624878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACGCGGGCCTCTGTCAGGTCGGTGCGCAGGGCCAGCTGCTCGCGGGCATACACGTCTGGGTAGTGTGTCTTCTGGAACACCTTCTCCAGTTCTTCCAGTTGGTAGCTGGTGAAGGTGGTGCGGTTGCGCCTCTTCTTGCCTTTGTTGCTCTCGCCCTCGGCCTTGTCTAGGGGACTGGCGAGCTCGGAGCCTGGCCGCTCCTGGGGCCCCTTCACCCCTGCCTCCTTCACGCTGAGGTAGCTGCCGTCCATCCCTGCAGGGTCAGCGCTCGGGGGCAACTCGGAGTCTGTCAGTCCAGGGCTGTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28101 lncRNA downstream 25412 9598692 ~ 9599154 (-) True G22414
TU28077 lncRNA downstream 161229 9457792 ~ 9463337 (-) False AMCG00007267
TU28070 lncRNA downstream 187297 9417768 ~ 9437269 (-) True G22393
TU27949 lncRNA downstream 439737 9181018 ~ 9184829 (-) True G22305
TU27941 lncRNA downstream 643748 8976117 ~ 8980818 (-) True G22298
TU28103 lncRNA upstream 8931 9633809 ~ 9640829 (-) True G22416
TU28210 lncRNA upstream 335184 9960062 ~ 9974326 (-) False AMCG00007282
TU28216 lncRNA upstream 408250 10033128 ~ 10042925 (-) True G22505
TU28217 lncRNA upstream 408250 10033128 ~ 10044315 (-) False G22505
TU28226 lncRNA upstream 460882 10085760 ~ 10086383 (-) True G22513
AMCG00007269 mRNA downstream 113227 9495648 ~ 9511339 (-) True AMCG00007269
AMCG00007266 mRNA downstream 136878 9473893 ~ 9487688 (-) True AMCG00007266
AMCG00007267 mRNA downstream 161905 9457488 ~ 9462661 (-) True AMCG00007267
AMCG00007268 mRNA downstream 197784 9411640 ~ 9426782 (-) True AMCG00007268
AMCG00007259 mRNA downstream 240879 9350044 ~ 9383687 (-) True AMCG00007259
AMCG00007272 mRNA upstream 19557 9644435 ~ 9683079 (-) True AMCG00007272
AMCG00007271 mRNA upstream 61228 9686106 ~ 9687263 (-) True AMCG00007271
AMCG00007273 mRNA upstream 65395 9690273 ~ 9750042 (-) True AMCG00007273
AMCG00007274 mRNA upstream 130046 9754924 ~ 9792167 (-) True AMCG00007274
AMCG00007283 mRNA upstream 314313 9939191 ~ 9943224 (-) True AMCG00007283
TU27830 other downstream 1228342 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 2117691 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 3610397 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 3804282 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 4567160 5056787 ~ 5057406 (-) True G21429
TU28289 other upstream 562436 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 3726639 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 4320765 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 6696119 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 6696159 16321037 ~ 16322651 (-) False AMCG00007365

Expression Profile