RNA id: TU28431


Basic Information

Item Value
RNA id TU28431
length 1079
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G22660
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10546996 ~ 10578902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccagACTTATTTAGGAAGCTTTTATTGCTAGAAATTCTCAAGTCatcagttttattcattttttccaaatCTATTCAGGAGGAGCATCTCAGAGAGCCAGTCAGCACAGGCAATACACACATTCTCCATTCTCATTAACACACAGGGTTTGACTTCATTAACTAGTTTGTTCAATTGTGAAAAATCAAAGCAGAAAGGCTATAGGTTAGAAAAATTCTGTACCATTACACACCCCTTTTGCATTATAGCACAAGAAAAAGTGCAAGGAATTAAGTCTCAaagtaaacacacaaaaaataaaattagtacATTTCTAAGTTGAACCCTCATTCCTATACAGGTGGGTTTTGTTAAGTGAACATTAGACTACAGACCATTGTTCTTTACATCATAACAGGCTGGTTCTAGGTCCAGCTGTAGAGATGATCTGGATTACAAGTACCATAGCATTTGCATTCAGACTGACAGTTAGATAAAGCCACCAATTAGATCAAATTAGTTTGTCTTATAAAggatagttgtttttttgtatccttTGGATAAGTGCATAATTTATACGAAACAGGTTGCAAGTCGACAAACGGGAGggaaacaaaagcaagaaaaaaagtcTACCCATTCCAAAAAGCAACActtttgcatttaattcagtGCATAAGGTTATGTATGAACTAGTACATGTACATAGTACATCATTTAGATTTGAAATTCCACTGACtgcatttggatttttttttttttttttttttttttttttttttaacaagtcatccatttcagtgtcagtgtgatCAGCTCATTGCAGATGTTCTACGTTGCCTTCACCTCCAGGATCATGCAATGCGTCACTGGAATGTCAGAATACTGCAGGGTAGTGTAAATGGATGgataggttttattttctcttatacACTAACATGCAAAAGTGCTGCCCTAGGAGTATGAGGGTTTTACAGAGATTTCAGTTTTCCTAGAGGGTGGCATGGGATCTACAAAGTCATATAGCAAACTTCAattttatgagtaactacaCATAAAGGtcaaaacaagtttaaaaaaaaaaaaaaaaaaagttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28372 lncRNA downstream 171777 10373739 ~ 10375219 (-) True G22619
TU28322 lncRNA downstream 274301 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA downstream 279843 10266636 ~ 10267153 (-) False AMCG00007298
TU28293 lncRNA downstream 302771 10152480 ~ 10244225 (-) True AMCG00007299
TU28226 lncRNA downstream 460613 10085760 ~ 10086383 (-) True G22513
TU28459 lncRNA upstream 32287 10611189 ~ 10612988 (-) True G22680
TU28447 lncRNA upstream 49446 10628348 ~ 10631934 (-) True G22671
TU28469 lncRNA upstream 75272 10654174 ~ 10655530 (-) True G22687
TU28496 lncRNA upstream 532443 11111345 ~ 11111723 (-) True G22713
TU28510 lncRNA upstream 685740 11264642 ~ 11282409 (-) True G22725
AMCG00007302 mRNA downstream 174049 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 220175 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 227365 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 274388 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007296 mRNA downstream 286889 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007309 mRNA upstream 173336 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007312 mRNA upstream 1565014 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 1683931 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 1684992 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 1738929 12317831 ~ 12319714 (-) True AMCG00007315
TU28289 other downstream 356792 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 2150772 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 3040121 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4532827 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4726712 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 2772615 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3366741 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 5742095 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 5742135 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 5951272 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile