RNA id: TU28459


Basic Information

Item Value
RNA id TU28459
length 1771
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G22680
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10611189 ~ 10612988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagtAAATAGGAAAGCTCCAGCTTTCatgtgtgtaaaataacattataaagtttagaatattttcttttttttaccaaCAGGTGAtttagaaacaaagaaagaaaggagaataTATTCCATTTCCATATCAAAACATATCAGTTCAATAAATATCAACACCATTTAACACAAGCATACACAGTAAACTTGCACTTCTCTTTCCTCCAATacaaaatcatattaataataatatctgtcaTCAAGGTTCTCATGTTTCCTTACAAAGTGGTCGACTTCTGCCAATAATGTTCGGTGTTTAGAAGTGCAGCTCCCTTATGTAGGGCTGCTGGCGAGAATTCAACTATACTTTCTGTCCCTTAAACAAAGTAAACCCTCCCCCTTTTTACAGGAGTCTGATAAAAATGGCATATCCATTGCTTGCATACTTTGCACACTTAATGAGTGTCCGATGGTTCTCGATTAATCTCAAGTCCTCCGAGCCAGACATTGTGTGCGCGTCTCCGGTCATCACACTTTCTGGATTCTTTAATTCTCTGTTGCAGAACATTCCCAACAACTAGCATACATCCCTGAACTGCTGCTGCCTGACCCGACTTGCTGCTTGCATTTCAGCAGATATTCGCAGGCACaatgttaaaaaaggaaaacattttctatattatCAAAGACCCCCCCCTATTAATTaaactccccttcctctccattATATGTACcttgaaagaaaaagattgCATTGGCAATTTACCCCTGTGTTACAGCAATACACTGCAATTCATCAGTTTGCAAAAGGAATCACTACACTTTGATTCGTAAAGCATGCCTAAGCTTTTAACAGCCTACATTAAACctcaattttaaatgcatcaaatgcatacatacatatatatatataaatattgaaataaataccaatgcttaaatgtatattgagcagatttgttctagatatttgttaaaaaaaaagttcaaatacAGTCAGGCTTCATTATGAAGCAAGCGGCAGCCCCAGCGATCACCGAGGTCTGCGTGGGGGAAAAACGGTCCTTTTCTACTGCGTGGAGTCTGAGTCGCTGGAGTCCACACTGCCCTGCATGGCGGACGTAGCCACCCAGCCCTTGGGGCAGTGGCTGGAGCTGTGCAAGTTCTGAGTACTGCGTCTCAGGCTTTCCAGCGACTGCAAGAAGGACTTCCGGGCTCGCTCTTCCTCCAGCGCCGAAACACCTTCCTCCTCCACTTCAGCGATCTCAGCGAAGGTCACTGGTTGGGTCTTGAAGCGGGACTGGCGGGGGCGGCGCATCCGGCTCTTGCCCCTGGCCGGGGATTTGGGCACAGGCAGATGCTGGGGAAATTCCTCCATCATAGCTGCCAGCAGGTGAGCAGGCACCACGGTCTGGTACCCTCCTGACTCCACGTGTCTGCTTGCCATGGCTCCTCGCGGAACTTCTTGGAGGCTGTGGGTGGCAGTAGAAACAATGGGCGAGACCAAAGGGTTTGTGGACCTTCTCCTTCAGGAAACGAGAGTCTTTTCTTGTCTCagtgaatgttttgtttttaaatcccagATGGTCAGAGTGTCAAGGTGAATCTGATCCTCCTCTGCTCTCCTTGCCTTTGCTGGCTCGCTGATTGTGATCCTGTTCAAGGCAGTTTAGTGCAGCAGGCACTGGGCTGTTGTAGCTTGCTTGGCTTGATGCTGTTGCTTCTGCTGCagctgctctcactctctctgcttTTGCACTGAACTCAGGCAGGCAGCCGTGGATTTATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28431 lncRNA downstream 32287 10546996 ~ 10578902 (-) True G22660
TU28372 lncRNA downstream 235970 10373739 ~ 10375219 (-) True G22619
TU28322 lncRNA downstream 338494 10266636 ~ 10272695 (-) True AMCG00007298
TU28323 lncRNA downstream 344036 10266636 ~ 10267153 (-) False AMCG00007298
TU28293 lncRNA downstream 366964 10152480 ~ 10244225 (-) True AMCG00007299
TU28447 lncRNA upstream 15360 10628348 ~ 10631934 (-) True G22671
TU28469 lncRNA upstream 41186 10654174 ~ 10655530 (-) True G22687
TU28496 lncRNA upstream 498357 11111345 ~ 11111723 (-) True G22713
TU28510 lncRNA upstream 651654 11264642 ~ 11282409 (-) True G22725
TU28520 lncRNA upstream 750609 11363597 ~ 11412595 (-) True G22732
AMCG00007302 mRNA downstream 238242 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 284368 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 291558 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 338581 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007296 mRNA downstream 351082 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007309 mRNA upstream 139250 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007312 mRNA upstream 1530928 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 1649845 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 1650906 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 1704843 12317831 ~ 12319714 (-) True AMCG00007315
TU28289 other downstream 420985 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 2214965 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 3104314 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4597020 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4790905 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 2738529 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3332655 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 5708009 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 5708049 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 5917186 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile