RNA id: TU28516



Basic Information


Item Value
RNA id TU28516
length 263
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G22730
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 11512153 ~ 11522358 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaagacacctctccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaataggctacaagaccatcaacaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaatatctcacctcATATAAAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28504 lncRNA upstream 281760 11229825 ~ 11230393 (+) True G22720
TU28495 lncRNA upstream 400430 11111343 ~ 11111723 (+) True G22712
TU28422 lncRNA upstream 827085 10626674 ~ 10685068 (+) True G22652
TU28342 lncRNA upstream 1190295 10320469 ~ 10321858 (+) True G22596
TU28244 lncRNA upstream 1270745 10239589 ~ 10241408 (+) True G22528
TU28528 lncRNA downstream 18625 11540983 ~ 11541524 (+) True G22738
TU28532 lncRNA downstream 48594 11570952 ~ 11573862 (+) True G22741
TU28547 lncRNA downstream 201134 11723492 ~ 11723746 (+) True G22756
TU28551 lncRNA downstream 290507 11812865 ~ 11813093 (+) True G22760
TU28560 lncRNA downstream 343078 11865436 ~ 11866024 (+) True G22769
AMCG00007310 mRNA upstream 734446 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007306 mRNA upstream 768478 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007305 mRNA upstream 844858 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007308 mRNA upstream 857164 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007307 mRNA upstream 900243 10611533 ~ 10611910 (+) False AMCG00007307
AMCG00007311 mRNA downstream 66276 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007317 mRNA downstream 2019398 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 2100786 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007322 mRNA downstream 2124269 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007328 mRNA downstream 2452947 13975305 ~ 13981853 (+) True AMCG00007328
TU28420 other upstream 899049 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 2012425 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 2800842 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 3115911 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 4133207 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 2956315 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 3764139 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 6676410 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 6684720 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 6767750 18290108 ~ 18292338 (+) True G23724

Expression Profile


TU28516 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU28516 Expression in each Bioproject

Bar chart with 5 bars.
TU28516 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.