RNA id: TU28529


Basic Information

Item Value
RNA id TU28529
length 657
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G22739
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 11540982 ~ 11541638 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTATGTTGGCTATGGTATAACCAAAGTTTAAGtgttgtaaattaataatacagtgtaaaaaCAATTGGTTATAACAtgttaatacataataaagtgAAATGTTGCCCTTCCtattgtaagatattatttgttagaatatatttttctatgggaaattctataccatctggtttggtagaggaaacagacctcctcccttttatctaagttccctggtagcccctggtagccctggtaaccctatctttatgaccagagaccaaaaagggacctgtcctctgattggctcctagccaaattcaaaatgacccccacttctaaattactttagcataaggcacccaagtcatggtggtggcaaaatgctattggttggaaggaaaccttataaaagggaaaacaaagagaatttgagttctcttaacttcttcatcctgcaacgagacacaagacagagctggagaggagagacagagagacacacaccgcttcctgcctgaccagactggcctataagctttactgtgaggagaaagaagaaaatgggtattatctgtttcttactgtaatccagcagaagcttaatattacttattttcagtaatataattgaatgatattagtttcctatttttgtcaaaataaatgattattgc

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28520 lncRNA downstream 128387 11363597 ~ 11412595 (-) True G22732
TU28510 lncRNA downstream 258573 11264642 ~ 11282409 (-) True G22725
TU28496 lncRNA downstream 429259 11111345 ~ 11111723 (-) True G22713
TU28469 lncRNA downstream 885452 10654174 ~ 10655530 (-) True G22687
TU28447 lncRNA downstream 909048 10628348 ~ 10631934 (-) True G22671
TU28535 lncRNA upstream 54477 11596115 ~ 11596436 (-) True G22744
TU28548 lncRNA upstream 181854 11723492 ~ 11723746 (-) True G22757
TU28559 lncRNA upstream 322277 11863915 ~ 11864160 (-) True G22768
TU28569 lncRNA upstream 349031 11890669 ~ 11890987 (-) True G22778
TU28570 lncRNA upstream 349750 11891388 ~ 11891641 (-) True G22779
AMCG00007309 mRNA downstream 787146 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007302 mRNA downstream 1168035 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 1214161 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 1221351 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 1268374 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007312 mRNA upstream 602278 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 721195 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 722256 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 776193 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007316 mRNA upstream 1521156 13062794 ~ 13264962 (-) True AMCG00007316
TU28289 other downstream 1350778 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 3144758 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 4034107 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 5526813 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 5720698 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 1809879 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 2404005 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 4779359 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 4779399 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 4988536 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile