RNA id: TU28576


Basic Information

Item Value
RNA id TU28576
length 221
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G22785
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 11907274 ~ 11907494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaatgaatatgttacCGAAATTGATTTCTACGCCCAGGATTGGTCGAAAAATGAAAACGGTCATAAAAGAAATTAATGAGGGTTTTGAGGTTTTGAGGAAATATGTAGAGTTTGACTCAGGCTTTATTTCAACAGCGAGGATGGGCGAAAATGTGGTGGGGGTTGGTTGCATGCTGCCAAAGACATCGACGATGACCTTGTCGACAttacccccacacccc

Function

GO:

id name namespace
GO:0050780 dopamine receptor binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28570 lncRNA downstream 15633 11891388 ~ 11891641 (-) True G22779
TU28569 lncRNA downstream 16287 11890669 ~ 11890987 (-) True G22778
TU28559 lncRNA downstream 43114 11863915 ~ 11864160 (-) True G22768
TU28548 lncRNA downstream 183528 11723492 ~ 11723746 (-) True G22757
TU28535 lncRNA downstream 310838 11596115 ~ 11596436 (-) True G22744
TU28586 lncRNA upstream 174252 12081746 ~ 12093476 (-) True G22794
TU28614 lncRNA upstream 1086183 12993677 ~ 12993936 (-) True G22819
TU28712 lncRNA upstream 1722751 13630245 ~ 13631291 (-) True G22901
TU28713 lncRNA upstream 1739037 13646531 ~ 13649777 (-) True G22902
TU28752 lncRNA upstream 2124855 14032349 ~ 14033212 (-) False AMCG00007326
AMCG00007309 mRNA downstream 1153438 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007302 mRNA downstream 1534327 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 1580453 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 1587643 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 1634666 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007312 mRNA upstream 236422 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 355339 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 356400 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 410337 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007316 mRNA upstream 1155300 13062794 ~ 13264962 (-) True AMCG00007316
TU28289 other downstream 1717070 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 3511050 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 4400399 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 5893105 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 6086990 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 1444023 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 2038149 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 4413503 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 4413543 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 4622680 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile