RNA id: TU28632



Basic Information


Item Value
RNA id TU28632
length 294
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G22837
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13351626 ~ 13351919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGTCTTGAGACAACTTGACAATCTCCTACGAACACCACCCTCAGGGTTACGAACAACATTAATGACCAAGACCAGACTTTCATCGGCCAAGATGGAGGCTTGactctgaagcaggttttcaatTTTAGATAGAAAAGCCTCAACATCTAACTCATCACCTCTCATTATGgtaaaaacactgctaaataatgAATCCGCTCTCAGCTCCAACTGCACCACATCCTGGGGTCTAACACGTTTGGTAATTCGGTCaagcatattttgtataatatcatGCATTGTAACAAATATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28611 lncRNA upstream 398530 12952875 ~ 12953096 (+) True G22816
TU28572 lncRNA upstream 1453489 11897543 ~ 11898137 (+) True G22781
TU28566 lncRNA upstream 1472020 11879400 ~ 11879606 (+) True G22775
TU28564 lncRNA upstream 1473764 11877505 ~ 11877862 (+) True G22773
TU28561 lncRNA upstream 1485142 11866163 ~ 11866484 (+) True G22770
TU28634 lncRNA downstream 1694 13353613 ~ 13354456 (+) True G22839
TU28640 lncRNA downstream 131576 13483495 ~ 13492334 (+) True G22844
TU28694 lncRNA downstream 279627 13631546 ~ 13631960 (+) True G22887
TU28695 lncRNA downstream 285505 13637424 ~ 13637624 (+) True G22888
TU28701 lncRNA downstream 325038 13676957 ~ 13677701 (+) True G22893
AMCG00007311 mRNA upstream 1747908 11588634 ~ 11603718 (+) True AMCG00007311
AMCG00007310 mRNA upstream 2573919 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007306 mRNA upstream 2607951 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007305 mRNA upstream 2684331 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007308 mRNA upstream 2696637 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007317 mRNA downstream 189837 13541756 ~ 13551121 (+) True AMCG00007317
AMCG00007321 mRNA downstream 271225 13623144 ~ 13624807 (+) True AMCG00007321
AMCG00007322 mRNA downstream 294708 13646627 ~ 13647013 (+) True AMCG00007322
AMCG00007328 mRNA downstream 623386 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007327 mRNA downstream 697474 14049393 ~ 14064082 (+) True AMCG00007327
TU28420 other upstream 2738522 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 3851898 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 4640315 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 4955384 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 5972680 7374323 ~ 7378946 (+) True G21891
TU28829 other downstream 1126754 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 1934578 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 4846849 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 4855159 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 4938189 18290108 ~ 18292338 (+) True G23724

Expression Profile