RNA id: TU28713


Basic Information

Item Value
RNA id TU28713
length 3247
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G22902
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13646531 ~ 13649777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAACAAAGTGGATCTTTCTTAGCAGCCATATATCAAGTCATCACTCCACAACTACCTGTACCAGGGTCATGTAGGATGAAAGCAGACTTTCAAAATGTTGCAACTATTATTCAAAGAACATTATACAAAGTATTTCAAGCCCCTTGGCAATTTACTTTAATGACAGGTTATTGGATTTCAAATGAACACAACCATTTCAGGGAGAATCCTCAAAAAAACTTCTCCATCAACCCCCTTGAACATGTTAAAGATGTAGAAACTGGAGGAACCATGGACTTGAAGttacttaaaaatattattttatttacgtATATTGTATGTCTGTGTGAAACCAGTGAAGGGCATTGGGAAGGCATATGTTTACCTTcccaatatataatatatgtccAGATATTAGTAGAGTAACATTTTCAGGTAATTTCTGCCATTTTCTGTTCTTAGCAGTACTATccatagtactgtgcaaatacAATCTCTTGGGACAGGATATGTAGAGAGATATATAACATACTACCAGGGGACTTTGACTCACTAAAAAGGGAATTGTGCAGATTGAAACTCCAATGGAAGAAAAGGTTAATGAACTGCTTTGTTACTTTGGTACagtgcaaaagcaaacaaaaaagtaggTGTTTTTATTGATCTAGTCCATTCAAACAACCATTAAGTTGTTAAGGAATTGTAACTACAAATATTATCTTTGTATGTTTAGAGTCTAGAGTTATTGTAACAACTTCTAAAGGCAGAATATGAAATCATTTAACCAGAGATTGACATTGGTAAACAGGGGATACATATGAAGTCCATAGAGAATGGATAGTTACAAAGAAGAATATATTGCTAGAGGTATAAAGGACAGACAATGAAAGACAAGAAATAAGTGGCCTGCAAGACTTAACTGATCAATTAGGAAAAGATATAGGAGAAAGATATACGAGTACTCTACAGAGCAAAATATACTAAAATCAAGTCCTGAGTGCTTTTGCTAACAAGATACATAGCTACATTAGATAAGGTAATTTAAAAGGTTTAAGGAAACTTAGATATGCAGACAGGCAAGTAAATAAAGACAGACAGTGATGTATCCTATGAccttaatttgattttgtttttgtaaaagtaGTTCCTTCAGttcttcattaatttaattcaagattCGTCCGGAGATTCAGGATCGACTAGGTTTCCATCTTAAAACTCAACAGATCAGTATTTCTTGGTACATCACATCACATACAGGGAGCAGACCAGGAAACAATTATTTATCTCCCAGTGCACAGAATAGACATGTGTAACTGCATGATGTACTGTATTTCTCTTGTCTAcccatctatctatctcttctttgttatttgtttgactCAAGACGTAATCACGCAGTTACTCACTACTACACTGTTCACAGAGGTAGAGAAAgagatgtgtgttgtgtgtgagacGTAACATGAGTTCAGGCATTGAGCTAAGCAAGTGTTCAGTGGCACTTCTGCTGTTGGACATTTGTATATCATTAAAAGTATAGCTAAAGAGCATGAAAAAGTAGACAAATGCtaaatctttgttttgtttttcaataattatttttaagctgACATTTATGCAGTTTAGATTTCTTAGTACTGGCTTGTTTTCCTAGTAGCAATGATTTCTGACTTTGTTGTGCAAACCACGCAGTCCTCCAATGTTGGGTAAAAGGattgttagaaaaaaaaattataaagtaCATTGCAGAAAGTAAATTCCtctttaagaaaactaaatatttttagaTGACTCAATTAAGACAGTTACACAGTAATTAAAgcaattgaatttgaatattgCACAGTATCTCTGGACTGAGTCTGGACTGTGCATTGGAGTATTTCAGAAGACTGGACAGTGGGAATGAAAAGACAATTAAGGACTTTGATCTTTAATGAGACCATGTCTAAAATCAAGCCGATTTTTCTACCTTCTCCTAGAAAAACTGAGCAGAGAAAATAATGCACAACAAAAGCgtgatgttttaaaacagatttgttaTCCTGACATTGTTATTCCTAAGGATTggttttaaactaaaaatacagtttagaaTGTCTCAGAATGGGACTATATCCTAGTATTTTTAGATAATGTACATCCCCAAACACAAAGCattctttgaaaatgaatgggatATTGTGCTTAATACCCGTGAAtattctgtctgtctgccaaAGATGGAAAAGGAACAATTGTAGAACATGCATCCAAAAAGATAAAACTGGAAGCCTGTAAGCAAAACAGTCAATATCCACCTATCCAGCAAATACTTTAGGATGTTGTAGTCTAAACAGCTTCCTAACctgaaaatgcaatatacagCAGATTATggtagtatattattattattgtttgtttgtttgtttttacatatactgtatttcacttttaattaaatagattaGGGgctagactaaatcaaaactttgacctaccttgCAAAGTAAAAAACTTTTATCCtatcatgttttaatataatgcaaAGACACTCAAACCACAATAGGGTATAggtttgtaatttatgtttcatgggtaggtcaaagaagaaattatacatatattcaaaattgtgatttgttttttaatgttttacccTAAACCACTGTACATTTTTTgcaccaaaatatatatttttatttctattttgtcaAAAGCACACCATCAGAACTGCAGTAATTGTTAGGTCATAGAATTACAGAGATTATAAAAGTCCAAAGGGTTTAAGGAATGTGGGTCAATCAGATAAGAAGTCCCTGAAGGAGCCAAAACTGAAGCTTCTGCCTGTTGATCCAAGTGTGGAGTTGGAATTGATTTTGGGGATCTTCTCCATCAACTTGGAAACAGTTCTCTTCCTGAAAGATGTTGGTGAAGAGGTAAGCTGTTTCATCATTTCCCCGTAAAGTGTGTGGAAGACAGTTGCTGTCTCCTCCCAGCTGTCCCTGGCTGAGATTTCAAAGAAGGGAAGTTTGAGCCCCTTGGACAGTGACTCTCCGTCCTCAGTAGTCACCATCCTATCATACTGGAGGTCCTTCTTGTTGGCCACAATGACGGTTGGAGGAGGATCACTACTCCCCTTCCGAGAGCCAGAGTGAATGTGGTTGACCAGGAAGCATAGTCTCATCACCTCGTCAAAGCTGCACCTGTCTGTCACCGAGTACACAATGAGAAAGCCATCCCCCCACTTAATCTTCTCTTCAATCAGCAATGCATCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28712 lncRNA downstream 15240 13630245 ~ 13631291 (-) True G22901
TU28614 lncRNA downstream 652595 12993677 ~ 12993936 (-) True G22819
TU28586 lncRNA downstream 1553055 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 1739037 11907274 ~ 11907494 (-) True G22785
TU28570 lncRNA downstream 1754890 11891388 ~ 11891641 (-) True G22779
TU28752 lncRNA upstream 382572 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 410993 14060770 ~ 14061129 (-) True G22941
TU28763 lncRNA upstream 411957 14061734 ~ 14062135 (-) True G22942
TU28764 lncRNA upstream 413718 14063495 ~ 14065298 (-) True G22943
TU28799 lncRNA upstream 534925 14184702 ~ 14189688 (-) True G22971
AMCG00007319 mRNA downstream 32086 13576675 ~ 13614445 (-) True AMCG00007319
AMCG00007320 mRNA downstream 252105 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007316 mRNA downstream 381569 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007315 mRNA downstream 1326817 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007313 mRNA downstream 1339475 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007318 mRNA upstream 28204 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007323 mRNA upstream 94193 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007325 mRNA upstream 245108 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007324 mRNA upstream 289563 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007326 mRNA upstream 331597 13981374 ~ 14033164 (-) True AMCG00007326
TU28633 other downstream 294458 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3456327 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5250307 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6139656 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 7632362 6007640 ~ 6014169 (-) False AMCG00007173
TU28749 other upstream 295866 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 2671220 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2671260 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2880397 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 4405693 18055470 ~ 18058949 (-) True G23661

Expression Profile