RNA id: TU28749


Basic Information

Item Value
RNA id TU28749
length 423
RNA type TUCP
GC content 0.48
exon number 1
gene id G22931
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13945643 ~ 13946065 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccatgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcctgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaattgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28713 lncRNA downstream 295866 13646531 ~ 13649777 (-) True G22902
TU28712 lncRNA downstream 314352 13630245 ~ 13631291 (-) True G22901
TU28614 lncRNA downstream 951707 12993677 ~ 12993936 (-) True G22819
TU28586 lncRNA downstream 1852167 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 2038149 11907274 ~ 11907494 (-) True G22785
TU28752 lncRNA upstream 86284 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 114705 14060770 ~ 14061129 (-) True G22941
TU28763 lncRNA upstream 115669 14061734 ~ 14062135 (-) True G22942
TU28764 lncRNA upstream 117430 14063495 ~ 14065298 (-) True G22943
TU28799 lncRNA upstream 238637 14184702 ~ 14189688 (-) True G22971
AMCG00007324 mRNA downstream 4972 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007325 mRNA downstream 33795 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007323 mRNA downstream 89246 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007318 mRNA downstream 258579 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007319 mRNA downstream 331198 13576675 ~ 13614445 (-) True AMCG00007319
AMCG00007326 mRNA upstream 35309 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007330 mRNA upstream 327995 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007331 mRNA upstream 340550 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007333 mRNA upstream 461079 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007340 mRNA upstream 989534 14935599 ~ 14937527 (-) True AMCG00007340
TU28633 other downstream 593570 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3755439 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5549419 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6438768 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 7931474 6007640 ~ 6014169 (-) False AMCG00007173
TU29239 other upstream 2374932 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2374972 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2584109 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 4109405 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 4830295 18776360 ~ 18777638 (-) True G23838

Expression Profile