RNA id: TU28764


Basic Information

Item Value
RNA id TU28764
length 1804
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G22943
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14063495 ~ 14065298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCCAACACAatgaatcttttattttaaaagaaaaatacattacatattgtatttacataacattttaaaaagcatgtatttgattttctcaaattattttataaaaaacaaatgttggaaATATTTGTAGGAAGAAAACCATGACCTCACAGTAGTGATAAGGCCAAAGTTATGGATGGAATATAGATAAAATTGAAGACCTGAGGATGCTGagcatatttaaaattacttgGACATCTAAGGTTTATCTTTTCAAATGGACTGAAAATAAGGTATCAGGCACAAAAAGCCTGGTATTGGCTTTTATAAGAGCACACAGGTCTTCctgaaatataatacatttcagtgattttgaaatgaaatataccaattttaatttgatttatttaatacgGAATGTGATTTCAACtggtattataattattacttatttgttaTTACAGTTATGTAAAAGGAAGAATATTGTGTCTTTAATATGTGCATCTTTATAAATTAGTTATGAGTTTTAAAAATCTCTACttaatttgacatttgaatTGAATCTTTTGAAGGAATGTTATGAATACATacttttaaaactgacaaaatcaaaacagctGTCAACAACTTGcaattgttcttttaaattggAATTAGAGATTTCACCACCCTATTACCTGTAGTACACTTTCACTGAATTGAAGAgtttagaaaatattaaaatcctaCATTTCAGACAGATGCTATAACTATATGACCACTGTCAGAAAACCCTCATATTATCTAAAGGGTTTCCACTTGTGAAAGGTGGTTTTGGAGAGGAATGTTACAGATTAATCCTCAGACTTTTCTTACCAGTTTTGGTGACGATTTGTATTATgccacatacattaaaaaaaaaaaaaagtgcaatgttAGCAGGGCTTTTTGTTTAAACCTTTTTTGGCACATTCTGCAACACAGTTATACAAACTCAGAGCACAAATTGAAAAAAGGGggtaaaaaaaattgaaatgtacaggAATATTCCCAAAATTGATTCTCAGTCTTGCCTGAAGGGACTTCTGCAGTGGTGTCAACCCCCATTACCCAGTTACTAAGTCAGTAAGTCTTTGTGCTCAAACAGGAAATGTACAACCTATTAGAAGTCTTCAGACAGGATTTACAACCCTACTGTGCTGCCTCACTTTTAAAGGCAGACGTCCAGTGTTTGGCACCAAAGCTCAGAGAAAGGCCTACTTCATGTTTTTCTCTATCCAGTCCTTGAAACTGGTTGCTCTGGTGTAGACCGTGTAAAGCTGTGGGCTGCAGGGTCGGTCATAGCCCCAGCTCACCAGCCCCAAAAGCTGCCACACAACCTTAGCGTCTCCCTGGCTGTCAGGTGTAGTCGAAGATGAAGGCAGGACTGTGATACCACCCGTATCAGATGGGCAGATATTGGAGAAGCTGTGGGGGAGCTCCCTGCCACAGAACATGTTGTCTGTGATGCTGACTGAGAGCCCATTTTGAGCATACTGGTGTTCACACTCCACCACGTCTGCCAGCTGAATAGGACCCACACGTGTGGTCTCGTTGTCAGGGGGACTGAGCTCAGACAAGATTGACCAGCCCATCACATAGCCCTTGAGGGCTGTAATCTCTCCCCCCTGGGCACTGGGGAGGCAAATAGGTAGAACTTTCTCATTGATCCGAGCTTTGTCCAGCAACTTCAACATGGCCAAGTCCGAATCCAGGACCAGTGGGTCGTAGTTGGGGTGAACAAGGATGGTGGAGACCTACAAGTCACATAAAACAGTATATAAcattacatgtttaataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28763 lncRNA downstream 1360 14061734 ~ 14062135 (-) True G22942
TU28762 lncRNA downstream 2366 14060770 ~ 14061129 (-) True G22941
TU28752 lncRNA downstream 30283 14032349 ~ 14033212 (-) False AMCG00007326
TU28713 lncRNA downstream 413718 13646531 ~ 13649777 (-) True G22902
TU28712 lncRNA downstream 432204 13630245 ~ 13631291 (-) True G22901
TU28799 lncRNA upstream 119404 14184702 ~ 14189688 (-) True G22971
TU28842 lncRNA upstream 413298 14478596 ~ 14480199 (-) True G23011
TU28944 lncRNA upstream 958943 15024241 ~ 15024745 (-) True G23101
TU28948 lncRNA upstream 1066090 15131388 ~ 15131598 (-) True G23105
TU29111 lncRNA upstream 1669327 15734625 ~ 15800952 (-) True G23225
AMCG00007326 mRNA downstream 30331 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007324 mRNA downstream 122824 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007325 mRNA downstream 151647 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007323 mRNA downstream 207098 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007318 mRNA downstream 376431 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007330 mRNA upstream 208762 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007331 mRNA upstream 221317 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007333 mRNA upstream 341846 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007340 mRNA upstream 870301 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007344 mRNA upstream 1087130 15152428 ~ 15153708 (-) True AMCG00007344
TU28749 other downstream 117430 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 711422 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3873291 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5667271 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6556620 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 2255699 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2255739 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2464876 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 3990172 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 4711062 18776360 ~ 18777638 (-) True G23838

Expression Profile