RNA id: TU28799


Basic Information

Item Value
RNA id TU28799
length 4934
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G22971
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14184702 ~ 14189688 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAGTTTGACTGCAGTAATAAACAATCACAATAAATCCAACATCAGAGATCAGGTTTAGTTATGAATCAACATTTATTAGTCTTCATAATCTTATGTACATCAAAGGTACAACACTTAGTGATATGTAGTAACAGCATTTTATCCCACTTGTCTGGTATTGAAAGgattttaaatagcttttattttctttttaatgtctttttacATCAGAATTACAGCTATAGATTCACAATATTTcgaaatctttaaaaacatctctaaaaatagaataaaattaaGGAAAACGGAAAGAGTGAGAAAGGTTACTGATTCTACGATATAAGATTTCatcaaaatacagaaacatcaGTAGAAAATAGAGACTTGTACATTAACTGGCTCATCATAGAAATGTTGTGCCTAccttattcttttttaaatgtgcgcagagatttccttttatttttctttattagaaaataaggaaaggaaaaagcCAAATTTAAAAGCAGGTGATTACAAGCAAAATCTGAGGTTGAAACCAATCCTTTATGAGCTACACTGGTAAATTCAGTGTAATAAAATGGGTGTTTTCTTGTAAGATTGGGGAAATGAAACTGATAGCTGATCTTTGAAACAGTTTATCTGTTTTTGATAAATTAAATAGATTGCTACATTCAACATGTTTCAGGTGGATTACTCTAATATTTCTAAAGCTGAAAAAGGAGAATTCAGATAAACCCAGCAGAAGGAGGAAACGATGAAAGCAGTATTGGAATTGGTGGTTCAAAGGAATCTCCCAGCCCAGCAAAGATTGCACAGGAATGTTAATATAGTAAACgtgttttcttctttcacaGTCTGAAATCCCAGCTGACACACCTGGCACTGTCTGGACACCGAGGATCAGTTCTTAACAGACACTGCCATGGTTTCATAAAACTGGGGAGAGGGTCCTCAAACAAGGATTAAACCATAAGAAAGAACCTGACATTTTTTATTCCAGTTCTCTTTGACAAATACCTTTTTGTGCTATTCAAGTTAGTTTAGTGTGCTTATCCagagctttttcttttcagtgggAACAGGCTTGACAGACTTCTAGTTGTCTTTAATAAATTTGACTTTTTCCTCTTGTGCTGTAAGCCTACTTAACCATCACAGCAATACCCATACTCCACAAACCAAGTAACATGACCCCACTTAAATGGACAAATTCACAGCAAGAAAGTTAATGTCATGGATAGTGTTCAAGTGAGCATTATCATATATCTGGAACATTCTTATTTGCTATTTaacatagaatatatatgtacaataaaatgaatgcacgcatgacttttaaattatgaaacaaacatttgaaatgtttacattagattaaaaaaagacagatatttatatattggaCATGTAGCAACTATGCAAGACTAGTTCAAACTAACAACTAACCAAAATGCAAAGacaagcaatttattttttaatcccttTTTTCTCAGCTATTTCTTTTACAGAGCACATAGGCAGGACTTCTCTACAGGATTACAAAATAGTCACAGGAAGTAAACACTATCCCTATACACCATTTCACAGAAATTTGAAGACTGCTacctaaaatatatacacaaagtgCAAGGAGGCACTTTTATATCATGCTTTCAGATAGTAGTACAAAAAGGTACATTTAAACTCCATGCTTCTACATCAATCAGTTAATACAGTGAATTGGTTAATCACTCAATCCCCTGAGGTGAAAGTCTGGTCTACCACCACTATTAAAATCAATACCTGAAATACCTGAAAATCAGAAGGCCTTATAGACTATAGAGAGTATAATTACCTCTCTATAGCAGTGCATCCAGTATACATATGATGTATGGAGGAATACTTTTACTTAggtgtaatttgtgatttaaataaaccCATGGTGTCAACTAGAGTGACTATTTTTTGGATAGGATAAAGGAAAAAGTAAATACGTTTTGAAACAGAAGTACCTTAAAGGCAAATACTTTCTATTGCTGGATTTACACACTGATATGTTTCCGATATGTTGAAAATCCTTTAGATATGTAGTCATATACAATATGATACATATATGCTATAGCATACAGCTATAACACTGAATTGCCTTCTTCAGTCTGTAGTAAATAATTGCAGATAAATGCAGGAAATCACCTGAAGGGATTGGGTGCTGTAATAGGAATGGCtgttaaatgtctttatttataaaataagaattCTAATAAGAATATTCTTCATTGTCACCATCATTGTAATCATCATAGTGGTTGCTCTGTTTACAGTTAACATCTTCAAGGCAATGTtgtcagtgaaaaacaaaaacaaacaacaaaataaacaacatgcacacacaacacatgcacacatgcacttgcacatacaacaaaatacaaacaactgGTCCAATGGTTGCTGCCATTTGGTTCTGTTGAGAGGAAACAATTCACCCTTTTACTACCTGATAGGAATGTACAATATTTAGAGATATAGTCCAGGTTTATAGTCAGTGCTCTGGCTTTCTGATTATCATGTCTGCAGCATATTTGCAAACACCTAAAAGTATGCTTTTGGAAACAAGACACCCCCTTTGGAGGTAATAAGAACAGTCATAAGCTTTGTAATAGGCAGAGCATGAGTCCCTGTACTTTGGGAAAATCTCCTGATTAAATGTCAaggcaagattaaaaaaaagtttatcaAGACTAGAGATTGGGACAGGAAGCGCTATTGTTTAAGATaggttgtattttgtgtttattttatttttaaacacaaatattggGAAAAGTCCCCTGGATATACTACTAAACTTTTAGAAAACATCACAGCGTActgagaaatgaaaatgttgacCTACTGGGTTACTGGGCCCTTTCAGTTCTAAGGAAAATTGCAGACAAATATATTGGAGGTAACAAAACAGGTAAACAACCAGACACAGTATATGACatctctttaaaaacattttttctcatacatttattttcaagagaggcaggtttcaggaagtcattttaaattccaCAGACAGGTAGACTGTAAAAAAAGAACACTTTTCTTAGCTTCTCTGCAATACATAACCTTTTTtcaattattgtaaaataaagggtatataaatgtttttgaaaaccaGTCAGAAGACATTATGAATGCTTAAAGTGTACTCGAATTCGGGGTGATTGGACTACAAaggtaatgtatatttttaacagttttcaaatacaatatgcaGCATTTGCCAACATTTAAGCTTTGAAGAGTGTTCTTTCAAAGATTACATTGGAGaacatgtgtattttttggTTGCTGTGTACAAATGTACCAACAAATTGAAAAAACCCAACATAAAACTCCCTTTCCTTGAAAAGAGAGGTAAGAGGGTCCATGTTGTGTGCTTCTATTTTCTATTAAGATATTCTGTGATGTACAGCTGATGAAAAATTGTCTGCCAATGTATAATCACTAAACTAATAACTCTTGTATTGTATACTGGTATCCTGGCAGTCTTATAGCCGTATGTGAATATTATATGAAATTGAAAGGTACAATAATCAAAAACTGCAAACATGATAATACTGATACTGTCAACCAATCAAGTTATCAacttatgttttatgttcatgtGTATGCTCCCTAAAGTCTCTTTAGGTATGATATCTGTACCCTTGTGACTGATCTCATTCAAGAGAACCAAGCTGTAACAAAGGCTAGGTTTCATTCTGACCATAActctaaataattatttttccttaaatagGGAATGgtatattaaaccattttactAGCTTTAAGAGggttcattttaaaaccaacttgtttttatataaatacatttttgggagATGTAATACTGACCACCTTTGCACAATTTGTTCAATTGAAAAGTCTGTAAATGTGCCTATATCAGAGCTTTGATATTCTCACATAGTGACCCTATTATTATATCTTGGATAATTCCataattaaagaagaaaaagtggactatgtatgttttaattccCTTAATgcagttattattgtttttattcatgaggtgaaaaacatatatatatatatatatatatatatatatatatatatacacacctctGAATCTATGCAATCTAAGAAGTTCCCTTGGTGCTgacaatacataaaaagtgaATGAATGATTATGCCATGTGcttgaatttaatttgtagtGTTATCCTTTGCTTTTTCGgacaaaataacttaaaatggGAGAGCCAGCacacttttttccctccccaTTAGGCTGCCTTGTCCGTGTCTATGAATGGAAAAGAACAGTGCAGACGGGGATCATCAGAACACCTGGAGGTATAACCGATACTGCACACGACTCCCCCTGAGTCTCTTTAACAAGGAATCCCTGTCTTTAACTGTCAATTACCACCAACCCTGGAAGTTTTTCTCTACTACCAGGAATGAGCCTAAAGTAATGGCTTCCATAGAGATCATCAAGGTGAAGGTGGTTTTGAAAAGAGAGTCAAGGTGATAAAAGTGAATTTACAAGCACCAGTCTTGAGAGCCATCACTGATTTCACAATGTCAGGCCGTTCATCATCTTTTTCCCCTCTCCATGGTTATTGGATTGCCTGCATCAAGCCCACAGCTTCTCTTCAAAGCACAGCTCAATAAAACGGGGCTTTTCTACCCTCCAATCCTTGACATTACACAATTACAACAAAACACATACTAGTAAGTTAGTTATTGGAGAAGGTTAGTAAGGTATATCAGTTAATCAGTAGGTCAGTCGTGATCGGTtgagaatgttttgttttttaagctaAATTATGAAACCaattattagttttgtttgattgatggattttagtttctgattttttcatttttgttttttgctttgatttcacCAGGAAGAAAGCTTGTGCAGCTCAGGATAAGGCGTAGCTGGGGtctgtgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28764 lncRNA downstream 119404 14063495 ~ 14065298 (-) True G22943
TU28763 lncRNA downstream 122567 14061734 ~ 14062135 (-) True G22942
TU28762 lncRNA downstream 123573 14060770 ~ 14061129 (-) True G22941
TU28752 lncRNA downstream 151490 14032349 ~ 14033212 (-) False AMCG00007326
TU28713 lncRNA downstream 534925 13646531 ~ 13649777 (-) True G22902
TU28842 lncRNA upstream 288908 14478596 ~ 14480199 (-) True G23011
TU28944 lncRNA upstream 834553 15024241 ~ 15024745 (-) True G23101
TU28948 lncRNA upstream 941700 15131388 ~ 15131598 (-) True G23105
TU29111 lncRNA upstream 1544937 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 1878395 16068083 ~ 16069464 (-) True G23250
AMCG00007326 mRNA downstream 151538 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007324 mRNA downstream 244031 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007325 mRNA downstream 272854 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007323 mRNA downstream 328305 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007318 mRNA downstream 497638 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007330 mRNA upstream 84372 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007331 mRNA upstream 96927 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007333 mRNA upstream 217456 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007340 mRNA upstream 745911 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007344 mRNA upstream 962740 15152428 ~ 15153708 (-) True AMCG00007344
TU28749 other downstream 238637 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 832629 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3994498 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5788478 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6677827 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 2131309 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2131349 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2340486 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 3865782 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 4586672 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU44619 True 4454 lncRNA 0.39 2 NC_048565.1 37192062 ~ 37196539 (-)