RNA id: TU28842


Basic Information

Item Value
RNA id TU28842
length 887
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G23011
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14478596 ~ 14480199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTACAGACACATCTCtatgttaaaaacatttgtaaaaaaaacaacaactaaataaccaggactaaataaagaaaaaaatgaattaagtgAACATTTAACAAACAAAGCCTTAAAATATGATGATTTATGTCggttacattattataattttcatattacatggaaaacatcatcatcacaaACAAGATATTTCAAATGATGCCCATAATAAGTAGGATGATTAATGCAATACTGTTGACCCTCTCTTTACAAATTTCCTTATTAACAGcacataattgttttttggTACAAAGCAACCAGGATGGAAACCAGGGGGAAATTTGATACAAATACACAGCACAATCACTTATCACTTAAAATCAGTCAGGGCCATAAGTATTCTGCCTATTAATGTTGCTTGTAATCATTTGGATTAGTAgaatactgtaaaaataaagcatgatCGCAATGACGATCAGGGAGAGAACGGTGGCAGCAATGTTGAAATTCCGGGACAGCCTCCCATAGTGTTTGGCTTGGTTCAGGTTCCTGACGACTTTCTGGTCTCTGGCTTTATGGAATAAAGAAAAGCCACCAGTCCCAGACAGCAGCAGTTGAGATAGCTGAAGTTGAAGATAGACCAGATGATGTGATCTTTCACAGGAAGCTGCTGCTCAATCTCCACCACGGTGACGGGTCCATAGGCCTTGTTCTGCGTGTATCCGATAGTGGGATCCATAGCTCGGCTGGTACTTCTCTGCAACGGAAGAAGCAGTCAGTCTTGCCAAGCGATGTGGTTACAGACGAGCAACTAAAGCGCTCTTTATAATGTCCCTCCCTGGCTGGGATAACGAATCAGGACCTCCCCTTTCCGCTGTCTATATTACTGCATACCCACTGGGGCCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28799 lncRNA downstream 288908 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 413298 14063495 ~ 14065298 (-) True G22943
TU28763 lncRNA downstream 416461 14061734 ~ 14062135 (-) True G22942
TU28762 lncRNA downstream 417467 14060770 ~ 14061129 (-) True G22941
TU28752 lncRNA downstream 445384 14032349 ~ 14033212 (-) False AMCG00007326
TU28944 lncRNA upstream 544042 15024241 ~ 15024745 (-) True G23101
TU28948 lncRNA upstream 651189 15131388 ~ 15131598 (-) True G23105
TU29111 lncRNA upstream 1254426 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 1587884 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1757262 16237461 ~ 16299256 (-) False AMCG00007366
AMCG00007333 mRNA downstream 53092 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 152096 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 204162 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007326 mRNA downstream 445432 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007324 mRNA downstream 537925 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007340 mRNA upstream 455400 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007344 mRNA upstream 672229 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007347 mRNA upstream 695987 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007346 mRNA upstream 709089 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 740898 15221097 ~ 15277958 (-) True AMCG00007348
TU28749 other downstream 532531 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1126523 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4288392 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6082372 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6971721 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1840798 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1840838 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2049975 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 3575271 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 4296161 18776360 ~ 18777638 (-) True G23838

Expression Profile