RNA id: TU28943



Basic Information


Item Value
RNA id TU28943
length 463
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G23100
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15024226 ~ 15024688 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agcacatgtacataagtattcacagcctttgccatgacactcaaaattgagctcaggtgcatcctgtttccactgatcatccttgagatgtttctacaacttctacaattggagtccacctgtggtaaattcagttgattggacatgatttggaaaggcacacacctgtctatataaggtcccacagttaacagtgcatgttagagcacaaaccaagccatgaaatccaaggaattgtctgtagacctttgagacaggattgtatcgaggcacagatctggggaagggtacagaaacatttctgcagcattggaggtcccaatgagcacagtggcctccatcatccataaatggaagaagtttggaaccaccaggactcttcctagagctggccacccggccaaactgagcgatcgggggagaagggccttagtcagggaggtgaccacgAACCCGATGGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28809 lncRNA upstream 733601 14286133 ~ 14290625 (+) True G22979
TU28789 lncRNA upstream 809170 14176735 ~ 14215056 (+) False G22962
TU28788 lncRNA upstream 809170 14210153 ~ 14215056 (+) True G22962
TU28765 lncRNA upstream 958582 14065371 ~ 14065644 (+) True G22944
TU28761 lncRNA upstream 959018 14064950 ~ 14065208 (+) True G22940
TU28981 lncRNA downstream 192488 15217176 ~ 15309751 (+) True G23130
TU28987 lncRNA downstream 252023 15276711 ~ 15279710 (+) False AMCG00007352
TU29003 lncRNA downstream 347318 15372006 ~ 15379965 (+) False AMCG00007350
TU29023 lncRNA downstream 645254 15669942 ~ 15753760 (+) True G23154
TU29063 lncRNA downstream 1006076 16030764 ~ 16067082 (+) True G23189
AMCG00007342 mRNA upstream 7691 14977530 ~ 15016535 (+) True AMCG00007342
AMCG00007343 mRNA upstream 51989 14945229 ~ 14972237 (+) True AMCG00007343
AMCG00007341 mRNA upstream 131079 14661678 ~ 14893147 (+) True AMCG00007341
AMCG00007338 mRNA upstream 364165 14630762 ~ 14660061 (+) True AMCG00007338
AMCG00007339 mRNA upstream 451965 14544895 ~ 14572261 (+) True AMCG00007339
AMCG00007345 mRNA downstream 141775 15166463 ~ 15172477 (+) True AMCG00007345
AMCG00007352 mRNA downstream 254039 15278727 ~ 15286630 (+) True AMCG00007352
AMCG00007351 mRNA downstream 307920 15332608 ~ 15349542 (+) True AMCG00007351
AMCG00007350 mRNA downstream 341973 15366661 ~ 15379061 (+) True AMCG00007350
AMCG00007354 mRNA downstream 467353 15492041 ~ 15579231 (+) True AMCG00007354
TU28829 other upstream 534534 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 4411122 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 5524498 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 6312915 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 6627984 8367436 ~ 8396242 (+) True AMCG00007243
TU28988 other downstream 261809 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 3174080 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 3182390 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 3265420 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 3543081 18567769 ~ 18570464 (+) False AMCG00007433

Expression Profile