RNA id: TU28944


Basic Information

Item Value
RNA id TU28944
length 505
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G23101
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15024241 ~ 15024745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgttcttctggaaggttctcctctctccacagagacacgctggatcTCTGTCAAGTTGACCATCGGGTTcgtggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggtggccagctctaggaagagtcctggtggttccaaacttcttccatttatggatgatggaggccactgtgctcattgggacctccaatgctgcagaaatgtttctgtacccttccccagatctgtgcctcgatacaatcctgtctcaaaggtctacagacaattccttggatttcatggcttggtttgtgctctaacatgcactgttaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaattgtagaagttgtagaaacatctcaaggatgatcagtggaaacaggatgcacctgagctcaattttgagtgtcatggcaaaggctgtgaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28842 lncRNA downstream 544042 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 834553 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 958943 14063495 ~ 14065298 (-) True G22943
TU28763 lncRNA downstream 962106 14061734 ~ 14062135 (-) True G22942
TU28762 lncRNA downstream 963112 14060770 ~ 14061129 (-) True G22941
TU28948 lncRNA upstream 106643 15131388 ~ 15131598 (-) True G23105
TU29111 lncRNA upstream 709880 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 1043338 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1212716 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 1266796 16291541 ~ 16299256 (-) True AMCG00007366
AMCG00007340 mRNA downstream 86714 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007333 mRNA downstream 598737 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 697741 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 749807 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007326 mRNA downstream 991077 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007344 mRNA upstream 127683 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007347 mRNA upstream 151441 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007346 mRNA upstream 164543 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 196352 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007349 mRNA upstream 263595 15288340 ~ 15313433 (-) True AMCG00007349
TU28749 other downstream 1078176 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1672168 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4834037 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6628017 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7517366 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1296252 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1296292 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1505429 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 3030725 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3751615 18776360 ~ 18777638 (-) True G23838

Expression Profile