RNA id: TU28948


Basic Information

Item Value
RNA id TU28948
length 211
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G23105
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15131388 ~ 15131598 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctttcttgtggattggtatgacatttgccgtcttccagtcagttggcacatcccctgttctaagtgtcatttggaatatttgagttagtggcctataaataatttcgctcatttctttaagtactgttggaaatataccatctggcccaggtgatttgttggtttttaattctgctagtccctttagtacctcctcctcatttatcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28944 lncRNA downstream 106643 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 651189 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 941700 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1066090 14063495 ~ 14065298 (-) True G22943
TU28763 lncRNA downstream 1069253 14061734 ~ 14062135 (-) True G22942
TU29111 lncRNA upstream 603027 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 936485 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1105863 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 1159943 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 1246920 16378518 ~ 16380291 (-) True G23344
AMCG00007340 mRNA downstream 193861 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007333 mRNA downstream 705884 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 804888 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 856954 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007326 mRNA downstream 1098224 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007344 mRNA upstream 20830 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007347 mRNA upstream 44588 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007346 mRNA upstream 57690 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 89499 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007349 mRNA upstream 156742 15288340 ~ 15313433 (-) True AMCG00007349
TU28749 other downstream 1185323 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1779315 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4941184 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6735164 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7624513 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1189399 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1189439 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1398576 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2923872 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3644762 18776360 ~ 18777638 (-) True G23838

Expression Profile