RNA id: TU29063



Basic Information


Item Value
RNA id TU29063
length 751
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G23189
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16030764 ~ 16067082 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGGAGGCAGGCTTGCCCAAAACGTTGAAAGTCACAATCAGAAACGTGCTCCAGCACTGAGTGTAGAgatgctgtgctgcagtgtcgtttaataaaatagaaagtGGGAAGAGGCGGGTCATAAGCACTTTGACATGACGTTTGGAGATTGCGATTGCTCCACCCAGAGAccagaaaagtttttttttaagttcttcCTCTACATTCAGATTACTGCCTACAACTGTGGGATTGCAAGACAGCCAgcgacacagagagagagagagagagagactggtcTGCGCTAACAGATCTGTGTTGTTGCCTAAAGTTTGGTCATGTTTTAGGCTACTTTAAACAGGAGAAAAGAGAGCAGGAAAACGAAACGAGAGAAAAAGTGTGTGTTGACATGAGACCGATCTGGAAAACATCTCTGTAGCTTCAGAACTGCTTCTACATCATGGGACACCTCCTTTTGACCAGAGACTTCCAGCTAAATACACTGGTTGCTCTAGTACTAATTTGTCAGGTCTCAAGTGTGTTGTCAGattGTAATTTCAGTAGTCCAATAAACTACACCattgaaacaacaacaattacatttcagtttaatgatCCTGAGTGTCAAATTAGAAATGTGTCTGGAATGCCATCTGGTCCCAATATTTCATCCTCTACAACGAATATTATCAGTGGCCTATCTCCGGGAAACACATATGAAGTGACGCTGAATTGCTCTTGCAGCTTAAATGTAACAACAAAGCCTGGTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29023 lncRNA upstream 277004 15669942 ~ 15753760 (+) True G23154
TU29003 lncRNA upstream 650799 15372006 ~ 15379965 (+) False AMCG00007350
TU28981 lncRNA upstream 721013 15217176 ~ 15309751 (+) True G23130
TU28987 lncRNA upstream 751054 15276711 ~ 15279710 (+) False AMCG00007352
TU28943 lncRNA upstream 1006076 15024226 ~ 15024688 (+) True G23100
TU29158 lncRNA downstream 85378 16152460 ~ 16157347 (+) True G23263
TU29191 lncRNA downstream 226022 16293104 ~ 16296008 (+) True G23294
TU29225 lncRNA downstream 289608 16356690 ~ 16411211 (+) False G23322
TU29224 lncRNA downstream 343691 16410773 ~ 16411211 (+) True G23322
TU29282 lncRNA downstream 593792 16660874 ~ 16662700 (+) False AMCG00007379
AMCG00007360 mRNA upstream 115115 15894764 ~ 15915649 (+) True AMCG00007360
AMCG00007357 mRNA upstream 339088 15679322 ~ 15691676 (+) True AMCG00007357
AMCG00007356 mRNA upstream 363341 15641895 ~ 15667423 (+) True AMCG00007356
AMCG00007355 mRNA upstream 406989 15613795 ~ 15623775 (+) True AMCG00007355
AMCG00007354 mRNA upstream 451533 15492041 ~ 15579231 (+) True AMCG00007354
AMCG00007370 mRNA downstream 14041 16081123 ~ 16100369 (+) True AMCG00007370
AMCG00007368 mRNA downstream 123105 16190187 ~ 16222036 (+) True AMCG00007368
AMCG00007369 mRNA downstream 158856 16225938 ~ 16228023 (+) True AMCG00007369
AMCG00007367 mRNA downstream 182015 16249097 ~ 16266529 (+) True AMCG00007367
AMCG00007371 mRNA downstream 234786 16301868 ~ 16303118 (+) True AMCG00007371
TU28988 other upstream 742804 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 1541072 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 5417660 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 6531036 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 7319453 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 2131686 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 2139996 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 2223026 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 2500687 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 2984260 19051342 ~ 19056133 (+) True G23893

Expression Profile