RNA id: TU29111


Basic Information

Item Value
RNA id TU29111
length 443
lncRNA type read_through
GC content 0.43
exon number 2
gene id G23225
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15734625 ~ 15800952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAATTGGCTCCTCTTCCACTAGAAGCTAAGTATTTTGatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagattttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccattttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattccacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 603027 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 709880 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 1254426 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1544937 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1669327 14063495 ~ 14065298 (-) True G22943
TU29141 lncRNA upstream 267131 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 436509 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 490589 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 577566 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 859929 16660881 ~ 16662665 (-) True G23379
AMCG00007353 mRNA downstream 349623 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007349 mRNA downstream 421192 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007348 mRNA downstream 456667 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007346 mRNA downstream 524607 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007347 mRNA downstream 549645 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007361 mRNA upstream 74015 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007363 mRNA upstream 133195 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007362 mRNA upstream 178361 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007364 mRNA upstream 469015 16269967 ~ 16270377 (-) True AMCG00007364
AMCG00007366 mRNA upstream 496050 16297002 ~ 16314032 (-) False AMCG00007366
TU28749 other downstream 1788560 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2382552 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5544421 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7338401 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8227750 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 520045 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 520085 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 729222 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2254518 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2975408 18776360 ~ 18777638 (-) True G23838

Expression Profile