RNA id: TU29321


Basic Information

Item Value
RNA id TU29321
length 2859
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G23397
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16706289 ~ 16709180 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACTTGTCTGGAAGTGCATGGATGTTTAATCACTAACTTCCCAAAGTTAGTGTTTTTTCAACAGATTCAGTATGCTACATTTCACATCAAAGAATTTCCCTTTCACGTCATACATGCGTTGTTTGTAAATTCAAAGCGTTCCATCCTAATTGATATATCCTCTCCACAGTCATTTCAATTCCTGTTTGAACATTTGTCACGACGTGCAACTATTGTGGAGATTTtcatgcaaagaaaaacatacattgaaaacatctttaaatataAGGTTTATTGCCATTACATGTTAACTGCATAATCCTGCCCTTTTCAACATACTTGTACAGTacacaatcaaacacaaaacactcaGTGCTGTCGACAATATCGGTTAGCTGCTGTTAGGAACTCTTCACTCAGAGGTCAGAACTGgaaaagtaaaattatatatatgccTTAATTATTTGCAATTCCAGCAGAGCAAAGACCTCTGAACATTCATTATCTCAGAGCCTGAATAGGATTTCAAAAGAGATACATTTAGCCACAGTTCTGGCCACAGTACCTAATTTTCTGAAATCTGAAGCACTGCATCTGCCAAAAAGCTGAACATTCATTGCACTGCAGCTGTGTTATCTTAATTATTATAGTTCTGATagctattattgttattatgttaGTCTAAATGAATTATAGCAAACCACAACAAGGAGGGAAAACTAATGGGGGCGTAATTGCTCCagagaaaaagtatttgataaataaacacattgaagttatttttcaatacaaGTGCTCAAATGgtacaaaaaagaaaggcacAATAAAACTGACAGCACAGTTGTCATAAGCAGAAGCTTGCATATTGGAGGTTaatcttttcaaaatgaatcaaaaaacacattaattctcccagcacaacaacaaaaagaaaaaatgtttagaaCACCCACAGTAAAACATGACTGACAGGAACAGAATAGAGGGGCTGGTAATTCattcttataataataagaagTTAAGAAATTAACCGCACATAAAGGCACTTAGAAGTTGTTTTCAAAAGGTCACtgaaaataaagtgcacaaAACGCCTGGAAGAGGCTGTAGTGTCTCAGACCTAGAACAGGCCTAGTGTTTCTTCACCTGAAGTTTTAAATAACGAAGGGTTGGTTCCACAGACCCTGACTGACACCAGTCTTAGATAccatatggaaaataaaatggtattcTTAAAAAAGTGCAATCAAGATGTGAAAGCAGTGGCATACGATATAAACATATGGTGTTCTCCATTATCGTAGATGTGGCTTAAACAACATTGTAATTATAAAGAAACAGGTTTGATGAGGCTTGCATATAAAAACGAGttttacacaatataaaatctTAGGCAtgattacaaaaacataaaaaggattgaaaaattaaaatcgAAAAGTCTCTCCACCTACTGCTCATCTAGAGTCCTAGTAGTCACTCAGTAAATTCTCTCTCCTGATACAATTAATCTCTTATTATTGTAACTATCATTACAAGGTGTCTTACAGTTCTTATTTCATTAATTGTGAagggaaggaagaaaaaaaagtcctgcCGGAGTTTAGGTAGATATGTAACAATCCAATATATggacaatttaataaaaatacacgCACAAACAATCAATCCACACAAACCTAATTATACAACATCAAAATGACAAGCCGGTTTGTGGTAAAGATCAGTGTGCAAACTTCAACTGTAACAAAGTCTGACAATGTTAAGCACCTTTACCAAATTCagacaatacaatttgaatattcTAAACCAAAAATGAGTGTGTTAAAGTAGCAATTCCCCTTTCAGGTTTTCACACAGTATTATTAATAGTGGAGCTCTAGATCAGCAAACATCACCTCACATACCAGGCGTGAGGTCTTGTGTGATGTAAATCTACACCACCTTCATTAAactgattttttattattaacattcaaATCATGCTTTAAAGACTCTGCATTAAATAGTCCTCTGTACCTTTAGTGTTCATAATAGTCAATGAAAACTACCCAAGTAAATGAAAAATCTGCATAATTCGTGAATTTAGTGCATAACTAATCTTTGAAGACTACTTTAACATTAGTTTATATAGGAAATTCTTTGAGGCTACTGCACCAAAATGGATCAGCCACTAACTCAGAttacatcaaaatatatttatatttatatttctgcagaTTGCACAAAACCTTAAAGCTGACATTACAGGTATTCCTTGCTTCAGATAAATCcaggtttatatttaaaactaaactggAGGCAATTTTAACAGGCGCAGAACGTCAGGGTACCACAGGATAAGGGTACATGTTAAATAGAGAGTGCCAGAGAATTTTGAGGTGAGGTAATTGCTTGTTCCGAGATGAACGAATCCACCCTGGTGTGCTGGGATGTATGCGTTAGAAACTGCAGAGGTGCAAACCAAGTCCGCTTACTTCCTGGCTCCTTCGGGACAGCTTGTGTTAAGATGCGTACCACAAGCGTCTACAGGGATCTTGCCTTTATATCCGGAGCTGCTGTAGAAAGTTGCTCAGAGATACAGCGCTCTCCCTTAATTTGGAGTTGTCCTCCTGCCCCAGGGTCAGTTTGGAGATCTTGGTCACCCCTCTTGTGCCCAACTCACAGGGCAAACTCAGGAATGCCTCCCCGCTGATGCCACCCCATGCCTGCAGCACAAAGCACACAGTATCACAGTAGAGCAGTTGCCAGGGGATCTCCATACGGCCCCTGGGTCCCACTGGGACTAAAACTGCATGAGACCTTTATTCCATTGCCTGGGAGTGGTCTTACTCTGGCCCgagtttgattgtgatgaaTTGTGGGAAAATGAATCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29290 lncRNA downstream 43624 16660881 ~ 16662665 (-) True G23379
TU29252 lncRNA downstream 325998 16378518 ~ 16380291 (-) True G23344
TU29199 lncRNA downstream 407033 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA downstream 407033 16291541 ~ 16299256 (-) True AMCG00007366
TU29141 lncRNA downstream 636825 16068083 ~ 16069464 (-) True G23250
TU29362 lncRNA upstream 239272 16948452 ~ 16948745 (-) True G23429
TU29364 lncRNA upstream 254787 16963967 ~ 16964267 (-) True G23431
TU29373 lncRNA upstream 283735 16992915 ~ 16993435 (-) True G23439
TU29374 lncRNA upstream 300609 17009789 ~ 17010047 (-) True G23440
TU29375 lncRNA upstream 306158 17015338 ~ 17015671 (-) True G23441
AMCG00007376 mRNA downstream 35654 16665551 ~ 16670635 (-) True AMCG00007376
AMCG00007375 mRNA downstream 176065 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007373 mRNA downstream 238602 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007374 mRNA downstream 262176 16385385 ~ 16444113 (-) True AMCG00007374
AMCG00007365 mRNA downstream 360709 16321578 ~ 16345580 (-) True AMCG00007365
AMCG00007380 mRNA upstream 2912 16712092 ~ 16732845 (-) True AMCG00007380
AMCG00007384 mRNA upstream 262122 16971302 ~ 16978773 (-) True AMCG00007384
AMCG00007387 mRNA upstream 340536 17049716 ~ 17058918 (-) True AMCG00007387
AMCG00007386 mRNA upstream 440992 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007388 mRNA upstream 477658 17186838 ~ 17190438 (-) True AMCG00007388
TU29265 other downstream 84384 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 383638 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 383638 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 2760224 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 3354216 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 1346290 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2067180 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 3205966 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 3622333 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 3761931 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile