RNA id: TU29373


Basic Information

Item Value
RNA id TU29373
length 521
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G23439
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16992915 ~ 16993435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATCCACCTTACAATGCAGAGGTGTCCAGTTTATACTGTAGCATTCAGTTCCTGGTGCGTAATCGGAGTCCATGGAGATCTCCAAGTCTGCAATTGAATCCCAAGTGTAACAGAACTCGGTCTTGTTCAACCAGCACAGGTTCTTCACGAAGGGCACTTCCAAGTCCGGAAAGTTTCCCACGTCAATCTCCACAAAGGTCTTCTCCTCGGTCAGTGTCTGTATTATCAGAGAATGGGTCCTTCTCTCCCAGATGAGTCCGCTGAAACTGCCCTTCAGGATCCAGTTCTTATTGGGCTGATCCACCACTTGCCAGTAAATGATCCCAATGGTCATAACGAAGAAGATGGCCACACCGAGACAGGCGATTGCGCCCTTCCACGTTTCGTTCATTTCCTTCAGACCCGAGTCCCATGTTACTTCTGGGATGGGGCTGGGGTTCCTATTTCGAGTGTGAGGCATAttgtttgaaacaaaataatcaggAAAAAAACTATCAGTTCAAAAAGACCATGGCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29364 lncRNA downstream 28648 16963967 ~ 16964267 (-) True G23431
TU29362 lncRNA downstream 44170 16948452 ~ 16948745 (-) True G23429
TU29321 lncRNA downstream 283735 16706289 ~ 16709180 (-) True G23397
TU29290 lncRNA downstream 330250 16660881 ~ 16662665 (-) True G23379
TU29252 lncRNA downstream 612624 16378518 ~ 16380291 (-) True G23344
TU29374 lncRNA upstream 16354 17009789 ~ 17010047 (-) True G23440
TU29375 lncRNA upstream 21903 17015338 ~ 17015671 (-) True G23441
TU29376 lncRNA upstream 22587 17016022 ~ 17016266 (-) True G23442
TU29381 lncRNA upstream 37950 17031385 ~ 17031682 (-) True G23447
TU29382 lncRNA upstream 39493 17032928 ~ 17038985 (-) True G23448
AMCG00007384 mRNA downstream 14142 16971302 ~ 16978773 (-) True AMCG00007384
AMCG00007380 mRNA downstream 260070 16712092 ~ 16732845 (-) True AMCG00007380
AMCG00007376 mRNA downstream 322280 16665551 ~ 16670635 (-) True AMCG00007376
AMCG00007375 mRNA downstream 462691 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007373 mRNA downstream 525228 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007387 mRNA upstream 56281 17049716 ~ 17058918 (-) True AMCG00007387
AMCG00007386 mRNA upstream 156737 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007388 mRNA upstream 193403 17186838 ~ 17190438 (-) True AMCG00007388
AMCG00007389 mRNA upstream 207425 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007393 mRNA upstream 333905 17327340 ~ 17348888 (-) True AMCG00007393
TU29265 other downstream 371010 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 670264 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 670264 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3046850 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 3640842 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 1062035 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1782925 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2921711 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 3338078 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 3477676 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile