RNA id: TU29504


Basic Information

Item Value
RNA id TU29504
length 2199
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G23548
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17506509 ~ 17509199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTGATTCGATGAGAACAATATTCCTCCCCACTGTCTCATGTCATGACTTACTTGGCTTCTTCCATTGCGGTTACTTCATCAAGGGGACCATTTAAAGTTTCATTTGAtggagattttgttttctcttctaaGTGCTTTAAACTGCCGAGAGAAAAAGACTCATAAGGAGATGATCTTAAAACTCTGCTGAAGGATTACACTGATGCAATGCAATATAAAAGTCACTGCATCCACTTTAAGCATGAATATTCTAATTCTAAAAGCATTATGTAAGCTTTTTGAAAACTTGTgccttcagaaatgtttttattcagtttgtgcaTTTAGTTAAAAATAGGATTTCTTAAAAAGAGGGGAAACTTAAGCACAACCATGATACCAAAATGCACTGATTGTGTCCTGAATCAAAGCAGTATAAAACACAGCCAGCAGAGTGAGCAGTCTGTGCCTCTAAATCTTCACTTGATTCGGCACCTAAATGCTTTCTGTGTATGAATACTGTGCAGTTAGTGAATATTTTAAGAGTAGAGAATTAGACCATTTACTGCTTGATGGATTCTTGGATACCTTGGTTTCTGACAGTTGCTGGCAGGTTGTGGAGAAGTAGGAGAACTCTTCTCAGCCTCTGCACTGTCTGTTACTGCATATTTCACAGAGACTTCTTCAGAGGTAGACACTTTTTCTTCCTCGCtagaaaacaatattacaattaGTGTTACAGTTAAGCtgaagatttgttttggtttaaaagGATGTATTTTTGATACATAACAGACACATGCAAAATGGAAATCAAGGACCACATTAGTGCAACAGcatggtataaaaaaaaaatgttgactgCATTCAGAAGTGACTAGAAAGTGCTTTgacacatacaataaataaccaGGTGCAAATAAAAATCTGGTCAAGCTCATCTAATGAGCCAGCACATTTTGGCTTGTCACCACCCACTTCAGATTAACAAATGCTTGCTTTAAGATCAGCCTTATATAGGAGAGTTGAAAGTTTAAACTTCAACATTTGAAACTCATTTTAGTTCTAAAGTGTAATTGAAAATCTGAATACCTTCAGTCAACCAAGACTTTTCAAGTTTCCTTTCCATAACCAACAAAACTTGCATAcagcaaatggaaaaaataaactgcaaaggCTTCAGTTACAAAAACACTGAGATTGCTTGTTTTAGATGCAAACTAAAGGAAATAAGCAATACATTACATCAGTTATCCAAAACCAGactaagcaaaataaaatggggCATAAAAACTTGCAATGTTTTATCTAAGGAATTAATTTGACGAGATAACCACTATAAAGCTAGTattaaacatttagtttaaatgtataaaaggttaaaaatttaaatttatattgaACCCTAAAGCCCTTATACCAAAATAGTCTGTTAAAGTGGTCCATActcaaaaaaacattgaataaaaGTAGTGAAGTTCATGTGTACATTCTTTTCCCTTTGGGAGGGTACCTGTTGCCAAGTTAACCCAAGAATGAATGGGAGGgtttatgaaatataaatacccTACACATTTATAGCAGGATCACATTCCTTAACAAATGCGATTCCTTTATCCATATCAACTGTAACCTGGTAACAATACTGTCCCATACCAAACTGTGGCTACAAGTAGGATAAAATGGCCACTTTCAGAGTATATTCATGGGACCATATCGATTACAGACAATAGCTCTATCTAGCCACcaggaataaagaaaaaagggaaggaaaaacaaatgctgaagGAGCAGTTGGGGTCCCACTTAGCATCACTTAACACCTCCCTTAAGTACAGGTATATTAATAGgaaaaactcaaaaacaaaactaccatATCCCCATCTTGACATATATAATCTGAAGTAAACATGCAAATGGTGATGACAAATCGAAGTGTCGGACATggaaacacatacacagcatAAGCGTCCCTTGTTTGCTGTACATACCGATAGGATTTCAACACTCTGAAGCCACACGCACgccTTTTGAAAACAGCAGTTTCAGTTTTGGCATCTACAGTAAGGCTGACCGTCTCCTTCATCGAGCCATTGGTGACAGTCTCCGTTATTCTGTCAGCTGTGgggtcctcttcctcctcaccCTCACAGCTTCCCTCCCCCTTCGCCCTGGGAAATACTTGAGGACTGGCGCACTCCTCCGGCCACTGCTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29492 lncRNA downstream 18093 17488120 ~ 17488416 (-) True G23539
TU29484 lncRNA downstream 26758 17475218 ~ 17479751 (-) True G23532
TU29430 lncRNA downstream 192415 17311969 ~ 17314094 (-) True G23487
TU29382 lncRNA downstream 467524 17032928 ~ 17038985 (-) True G23448
TU29381 lncRNA downstream 474827 17031385 ~ 17031682 (-) True G23447
TU29506 lncRNA upstream 2325 17511524 ~ 17511794 (-) True G23550
TU29524 lncRNA upstream 72407 17581606 ~ 17583440 (-) True G23566
TU29539 lncRNA upstream 149153 17658352 ~ 17658558 (-) True G23580
TU29583 lncRNA upstream 265352 17774551 ~ 17774846 (-) True G23620
TU29587 lncRNA upstream 312568 17821767 ~ 17823318 (-) True G23624
AMCG00007392 mRNA downstream 135253 17353112 ~ 17371256 (-) True AMCG00007392
AMCG00007393 mRNA downstream 157621 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007389 mRNA downstream 268783 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007388 mRNA downstream 316071 17186838 ~ 17190438 (-) True AMCG00007388
AMCG00007386 mRNA downstream 338332 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007399 mRNA upstream 12590 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007401 mRNA upstream 83102 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007405 mRNA upstream 314695 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007406 mRNA upstream 434572 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007411 mRNA upstream 453522 17962721 ~ 17978522 (-) True AMCG00007411
TU29265 other downstream 884604 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1183858 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1183858 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3560444 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4154436 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 546271 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1267161 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2405947 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2822314 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2961912 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile