RNA id: TU29539


Basic Information

Item Value
RNA id TU29539
length 207
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G23580
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17658352 ~ 17658558 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaatcagaggagcttctccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttctttacacagagagtcgtcataatctggaacaaac

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29524 lncRNA downstream 74912 17581606 ~ 17583440 (-) True G23566
TU29506 lncRNA downstream 146558 17511524 ~ 17511794 (-) True G23550
TU29504 lncRNA downstream 149153 17506509 ~ 17509199 (-) True G23548
TU29492 lncRNA downstream 169936 17488120 ~ 17488416 (-) True G23539
TU29484 lncRNA downstream 178601 17475218 ~ 17479751 (-) True G23532
TU29583 lncRNA upstream 115993 17774551 ~ 17774846 (-) True G23620
TU29587 lncRNA upstream 163209 17821767 ~ 17823318 (-) True G23624
TU29596 lncRNA upstream 247543 17906101 ~ 17906408 (-) True G23629
TU29637 lncRNA upstream 314348 17972906 ~ 18062992 (-) True G23663
TU29651 lncRNA upstream 413497 18072055 ~ 18074005 (-) True G23676
AMCG00007401 mRNA downstream 9580 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007399 mRNA downstream 127753 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007392 mRNA downstream 287096 17353112 ~ 17371256 (-) True AMCG00007392
AMCG00007393 mRNA downstream 309464 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007389 mRNA downstream 420626 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007405 mRNA upstream 165336 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007406 mRNA upstream 285213 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007411 mRNA upstream 304163 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007409 mRNA upstream 321684 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007412 mRNA upstream 380277 18038835 ~ 18048218 (-) True AMCG00007412
TU29265 other downstream 1036447 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1335701 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1335701 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3712287 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4306279 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 396912 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1117802 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2256588 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2672955 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2812553 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile