RNA id: TU29587


Basic Information

Item Value
RNA id TU29587
length 1552
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G23624
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17821767 ~ 17823318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCGTGATGGTTTTCTCGATCGTCCACTGTCGCTGCAGATGGAAGGGGATTGATTTTTCCGATCCAGGCTGTCGTTCCCCGAGATCGTGAGATttttattctgattttttttttttttttttccaacaattTATGGAATCCGGACTGATGCAgagattttatttgcatttttttatggaTGTGCTTTTGGATAACTTGGATATACACGGCCAAACCTTTCATGGTGAAGGGTGTCGGGCTGTGCTCAGTAAAGGAAGTGTGCCGGTCTGCCTGGACTGCCGTGTCTGAGCCGGTGGCCCCGTTGGTGTAGCGGGAGGAGGAGTCATGCCAGCTGGCTCAGGGAGCTCCGCATACATACTGAAGGGACacatgggggtggggtgggctGGGGGGGTGAGAGAACTTTGTGAATTAAAGAACATTGTAAAATTTTGGTTAAATAACTGTCTACTCCATATCTGTGCCCTTTCCCCCATGTCTCATTAGCTGAAATGAAAATTCACATGTGGTGGGATTGTCCTTCTGGAGCCTCTTGGTTTGATTAATGGCTGGCAATTGTTTAATCTGATCAATTTTAATTCCTTTGTAAATCAGGTACACCCCCCCTCTTATAAAGACAGGAATACCACTGAACCCATCACAGTGTATTGTCAGCACAGACATCTTGTGTTGCAGCAAGCGATTGGGCCACTTCTGTTGTATCGGCCTGTAAGAATGGCTCTTCCTGGTCGGCAGGAATTCGCGGGGGGTCGGGCCTATTTTCAAGCGGTTCAGTCGTCTAGTGATGCCTGTTCTCACTTAATTACAGATAGAGTAATATAGAAATTGTGTGGTGAAGAGCAAGAGGAGTTGCAGGCCCCacttctggaaccagacagccCAATTGAGAGGCTGGGTCGGGCAGCCCTCCCTTGCATGTTCAGGAGATTCTGGTGTCATGGGAAGCTTTAATACAACAGAATTTAATATTCAGGTCTTCGTTTTTTCTTTGAAGTGCTGGTAAAGCACTCTAACCTATAAGGGTCCCGctgtttgattttgttaaaaCCCCTGCACAGTGTGGCCCAGACACCCAGAGGGGTCAGCCAGCCTCCCTCTGCAGGGACTTCAACCTCTCCTGTGTTTGAGACCCACAGAGTTCCTCCTGACAACAGCAGAAGAGCCTGTTGCCGGTTCCTTTACGTTGTCAGAGTGACGCATTGGTTATGTAAACGCTTGATCAATTTGAACTTTCACTGACAGTCAGCCCAGCCCTGGATTTGAACGTCTGACCCTGCCAGTCTCCATGTCCCTGTCCTGTGTGTGTACAGCCatgcaaatgtaaaactgaGTACTTACTGTACGACTGGCAGGGGGAACAAAGCCCTCAAACTCTTGTACAGGGACTGGGTCCGGTAAAAGCTCAGTCTGACTTCTACTCGCTCGTTTtatttctctccttctccccttcAGTCCAAGCAGCCAGGGAGCTGGGCTCAATTGTCTGAGAAATCCAGTCTCAAACTCACACCAAAGTATGTAGCAAACTTTGTCATCACTGAAGATGTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29583 lncRNA downstream 46921 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 163209 17658352 ~ 17658558 (-) True G23580
TU29524 lncRNA downstream 238327 17581606 ~ 17583440 (-) True G23566
TU29506 lncRNA downstream 309973 17511524 ~ 17511794 (-) True G23550
TU29504 lncRNA downstream 312568 17506509 ~ 17509199 (-) True G23548
TU29596 lncRNA upstream 82783 17906101 ~ 17906408 (-) True G23629
TU29637 lncRNA upstream 149588 17972906 ~ 18062992 (-) True G23663
TU29651 lncRNA upstream 248737 18072055 ~ 18074005 (-) True G23676
TU29680 lncRNA upstream 379141 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 490833 18314151 ~ 18403277 (-) True G23745
AMCG00007401 mRNA downstream 172995 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007399 mRNA downstream 291168 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007392 mRNA downstream 450511 17353112 ~ 17371256 (-) True AMCG00007392
AMCG00007393 mRNA downstream 472879 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007389 mRNA downstream 584041 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007405 mRNA upstream 576 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007406 mRNA upstream 120453 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007411 mRNA upstream 139403 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007409 mRNA upstream 156924 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007412 mRNA upstream 215517 18038835 ~ 18048218 (-) True AMCG00007412
TU29265 other downstream 1199862 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1499116 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1499116 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3875702 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4469694 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 232152 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 953042 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2091828 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2508195 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2647793 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile